ZN429.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN429.H12INVITRO.0.P.D
Gene (human)	ZNF429 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vdRCCCWKTKbdnSCWMYKCCYv
GC content	58.42%
Information content (bits; total / per base)	16.035 / 0.697
Data sources	ChIP-Seq
Aligned words	398

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.868	0.909	0.783	0.837	0.968	0.973	6.319	6.775	429.722	487.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.214
HGNC	HGNC:20817
MGI
EntrezGene (human)	GeneID:353088 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN429_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86V71 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN429.H12INVITRO.0.P.D.pcm
PWM	ZN429.H12INVITRO.0.P.D.pwm
PFM	ZN429.H12INVITRO.0.P.D.pfm
Alignment	ZN429.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN429.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN429.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN429.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN429.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN429.H12INVITRO.0.P.D_homer_format_0.001.txt ZN429.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN429.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	92.0	165.0	71.0	70.0
02	204.0	20.0	79.0	95.0
03	132.0	6.0	250.0	10.0
04	5.0	339.0	42.0	12.0
05	6.0	367.0	15.0	10.0
06	1.0	366.0	1.0	30.0
07	268.0	16.0	38.0	76.0
08	11.0	46.0	79.0	262.0
09	0.0	125.0	6.0	267.0
10	32.0	17.0	184.0	165.0
11	28.0	143.0	112.0	115.0
12	100.0	46.0	195.0	57.0
13	80.0	115.0	100.0	103.0
14	44.0	273.0	59.0	22.0
15	12.0	350.0	5.0	31.0
16	109.0	24.0	17.0	248.0
17	154.0	187.0	35.0	22.0
18	18.0	92.0	10.0	278.0
19	57.0	10.0	265.0	66.0
20	17.0	336.0	18.0	27.0
21	20.0	320.0	8.0	50.0
22	45.0	80.0	25.0	248.0
23	74.0	148.0	143.0	33.0

PFM

	A	C	G	T
01	0.231	0.415	0.178	0.176
02	0.513	0.05	0.198	0.239
03	0.332	0.015	0.628	0.025
04	0.013	0.852	0.106	0.03
05	0.015	0.922	0.038	0.025
06	0.003	0.92	0.003	0.075
07	0.673	0.04	0.095	0.191
08	0.028	0.116	0.198	0.658
09	0.0	0.314	0.015	0.671
10	0.08	0.043	0.462	0.415
11	0.07	0.359	0.281	0.289
12	0.251	0.116	0.49	0.143
13	0.201	0.289	0.251	0.259
14	0.111	0.686	0.148	0.055
15	0.03	0.879	0.013	0.078
16	0.274	0.06	0.043	0.623
17	0.387	0.47	0.088	0.055
18	0.045	0.231	0.025	0.698
19	0.143	0.025	0.666	0.166
20	0.043	0.844	0.045	0.068
21	0.05	0.804	0.02	0.126
22	0.113	0.201	0.063	0.623
23	0.186	0.372	0.359	0.083

PWM

	A	C	G	T
01	-0.077	0.5	-0.332	-0.345
02	0.71	-1.547	-0.227	-0.046
03	0.279	-2.601	0.912	-2.173
04	-2.744	1.215	-0.842	-2.013
05	-2.601	1.294	-1.812	-2.173
06	-3.7	1.292	-3.7	-1.165
07	0.981	-1.753	-0.939	-0.265
08	-2.09	-0.754	-0.227	0.959
09	-4.212	0.225	-2.601	0.978
10	-1.104	-1.697	0.608	0.5
11	-1.231	0.358	0.117	0.143
12	0.005	-0.754	0.666	-0.546
13	-0.215	0.143	0.005	0.034
14	-0.797	1.0	-0.512	-1.458
15	-2.013	1.247	-2.744	-1.134
16	0.09	-1.377	-1.697	0.904
17	0.432	0.624	-1.018	-1.458
18	-1.645	-0.077	-2.173	1.018
19	-0.546	-2.173	0.97	-0.403
20	-1.697	1.206	-1.645	-1.265
21	-1.547	1.158	-2.364	-0.674
22	-0.776	-0.215	-1.338	0.904
23	-0.291	0.392	0.358	-1.074

Standard thresholds

P-value	Threshold
0.001	3.09801
0.0005	4.17676
0.0001	6.45666