ZN425.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN425.H12RSNP.0.P.D
Gene (human)	ZNF425 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	9
Consensus	bdGAGGSCY
GC content	69.4%
Information content (bits; total / per base)	9.301 / 1.033
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.733	0.736	0.575	0.577	0.65	0.658	1.617	1.63	151.87	158.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.218
HGNC	HGNC:20690
MGI
EntrezGene (human)	GeneID:155054 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN425_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6IV72 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN425.H12RSNP.0.P.D.pcm
PWM	ZN425.H12RSNP.0.P.D.pwm
PFM	ZN425.H12RSNP.0.P.D.pfm
Alignment	ZN425.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN425.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN425.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN425.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN425.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN425.H12RSNP.0.P.D_homer_format_0.001.txt ZN425.H12RSNP.0.P.D_homer_format_0.0005.txt ZN425.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	143.0	172.0	536.0	149.0
02	386.0	72.0	356.0	186.0
03	20.0	42.0	931.0	7.0
04	992.0	1.0	5.0	2.0
05	116.0	4.0	870.0	10.0
06	26.0	2.0	964.0	8.0
07	99.0	156.0	690.0	55.0
08	129.0	824.0	42.0	5.0
09	98.0	525.0	54.0	323.0

PFM

	A	C	G	T
01	0.143	0.172	0.536	0.149
02	0.386	0.072	0.356	0.186
03	0.02	0.042	0.931	0.007
04	0.992	0.001	0.005	0.002
05	0.116	0.004	0.87	0.01
06	0.026	0.002	0.964	0.008
07	0.099	0.156	0.69	0.055
08	0.129	0.824	0.042	0.005
09	0.098	0.525	0.054	0.323

PWM

	A	C	G	T
01	-0.553	-0.371	0.759	-0.513
02	0.432	-1.228	0.351	-0.293
03	-2.45	-1.75	1.31	-3.362
04	1.373	-4.525	-3.622	-4.213
05	-0.76	-3.783	1.242	-3.066
06	-2.206	-4.213	1.345	-3.253
07	-0.916	-0.467	1.011	-1.49
08	-0.655	1.188	-1.75	-3.622
09	-0.926	0.738	-1.508	0.255

Standard thresholds

P-value	Threshold
0.001	4.96518
0.0005	5.8272
0.0001	7.455715