MotifZN425.H12INVITRO.0.P.D
Gene (human)ZNF425
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length9
ConsensusbdGAGGSCY
GC content69.4%
Information content (bits; total / per base)9.301 / 1.033
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.733 0.736 0.575 0.577 0.65 0.658 1.617 1.63 151.87 158.509
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.218
HGNCHGNC:20690
MGI
EntrezGene (human)GeneID:155054
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN425_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6IV72
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01143.0172.0536.0149.0
02386.072.0356.0186.0
0320.042.0931.07.0
04992.01.05.02.0
05116.04.0870.010.0
0626.02.0964.08.0
0799.0156.0690.055.0
08129.0824.042.05.0
0998.0525.054.0323.0
PFM
ACGT
010.1430.1720.5360.149
020.3860.0720.3560.186
030.020.0420.9310.007
040.9920.0010.0050.002
050.1160.0040.870.01
060.0260.0020.9640.008
070.0990.1560.690.055
080.1290.8240.0420.005
090.0980.5250.0540.323
PWM
ACGT
01-0.553-0.3710.759-0.513
020.432-1.2280.351-0.293
03-2.45-1.751.31-3.362
041.373-4.525-3.622-4.213
05-0.76-3.7831.242-3.066
06-2.206-4.2131.345-3.253
07-0.916-0.4671.011-1.49
08-0.6551.188-1.75-3.622
09-0.9260.738-1.5080.255
Standard thresholds
P-value Threshold
0.001 4.96518
0.0005 5.8272
0.0001 7.455715