| Motif | ZN425.H12INVITRO.0.P.D |
| Gene (human) | ZNF425 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | ZN425.H12INVITRO.0.P.D |
| Gene (human) | ZNF425 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | bdGAGGSCY |
| GC content | 69.4% |
| Information content (bits; total / per base) | 9.301 / 1.033 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 1 (4) | 0.733 | 0.736 | 0.575 | 0.577 | 0.65 | 0.658 | 1.617 | 1.63 | 151.87 | 158.509 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.218 |
| HGNC | HGNC:20690 |
| MGI | |
| EntrezGene (human) | GeneID:155054 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN425_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | Q6IV72 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 1 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN425.H12INVITRO.0.P.D.pcm |
| PWM | ZN425.H12INVITRO.0.P.D.pwm |
| PFM | ZN425.H12INVITRO.0.P.D.pfm |
| Alignment | ZN425.H12INVITRO.0.P.D.words.tsv |
| Threshold to P-value map | ZN425.H12INVITRO.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZN425.H12INVITRO.0.P.D_jaspar_format.txt |
| MEME format | ZN425.H12INVITRO.0.P.D_meme_format.meme |
| Transfac format | ZN425.H12INVITRO.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 143.0 | 172.0 | 536.0 | 149.0 |
| 02 | 386.0 | 72.0 | 356.0 | 186.0 |
| 03 | 20.0 | 42.0 | 931.0 | 7.0 |
| 04 | 992.0 | 1.0 | 5.0 | 2.0 |
| 05 | 116.0 | 4.0 | 870.0 | 10.0 |
| 06 | 26.0 | 2.0 | 964.0 | 8.0 |
| 07 | 99.0 | 156.0 | 690.0 | 55.0 |
| 08 | 129.0 | 824.0 | 42.0 | 5.0 |
| 09 | 98.0 | 525.0 | 54.0 | 323.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.143 | 0.172 | 0.536 | 0.149 |
| 02 | 0.386 | 0.072 | 0.356 | 0.186 |
| 03 | 0.02 | 0.042 | 0.931 | 0.007 |
| 04 | 0.992 | 0.001 | 0.005 | 0.002 |
| 05 | 0.116 | 0.004 | 0.87 | 0.01 |
| 06 | 0.026 | 0.002 | 0.964 | 0.008 |
| 07 | 0.099 | 0.156 | 0.69 | 0.055 |
| 08 | 0.129 | 0.824 | 0.042 | 0.005 |
| 09 | 0.098 | 0.525 | 0.054 | 0.323 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.553 | -0.371 | 0.759 | -0.513 |
| 02 | 0.432 | -1.228 | 0.351 | -0.293 |
| 03 | -2.45 | -1.75 | 1.31 | -3.362 |
| 04 | 1.373 | -4.525 | -3.622 | -4.213 |
| 05 | -0.76 | -3.783 | 1.242 | -3.066 |
| 06 | -2.206 | -4.213 | 1.345 | -3.253 |
| 07 | -0.916 | -0.467 | 1.011 | -1.49 |
| 08 | -0.655 | 1.188 | -1.75 | -3.622 |
| 09 | -0.926 | 0.738 | -1.508 | 0.255 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.96518 |
| 0.0005 | 5.8272 |
| 0.0001 | 7.455715 |