ZN423.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN423.H12CORE.0.P.C
Gene (human)	ZNF423 (GeneCards)
Gene synonyms (human)	KIAA0760, NPHP14, OAZ
Gene (mouse)	Znf423
Gene synonyms (mouse)	Ebfaz, Kiaa0760, Nur12, Oaz, Zfp423
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	14
Consensus	vRbhCCChGGRGhS
GC content	73.27%
Information content (bits; total / per base)	11.922 / 0.852
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.815	0.858	0.681	0.743	0.697	0.737	1.936	2.098	94.658	120.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF423-like {2.3.4.12} (TFClass)
TFClass ID	TFClass: 2.3.4.12.1
HGNC	HGNC:16762
MGI	MGI:1891217
EntrezGene (human)	GeneID:23090 (SSTAR profile)
EntrezGene (mouse)	GeneID:94187 (SSTAR profile)
UniProt ID (human)	ZN423_HUMAN
UniProt ID (mouse)	ZN423_MOUSE
UniProt AC (human)	Q2M1K9 (TFClass)
UniProt AC (mouse)	Q80TS5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN423.H12CORE.0.P.C.pcm
PWM	ZN423.H12CORE.0.P.C.pwm
PFM	ZN423.H12CORE.0.P.C.pfm
Alignment	ZN423.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN423.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN423.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN423.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN423.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN423.H12CORE.0.P.C_homer_format_0.001.txt ZN423.H12CORE.0.P.C_homer_format_0.0005.txt ZN423.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	214.0	205.0	457.0	127.0
02	215.0	85.0	621.0	82.0
03	87.0	540.0	284.0	92.0
04	186.0	318.0	83.0	416.0
05	23.0	854.0	52.0	74.0
06	7.0	941.0	6.0	49.0
07	12.0	972.0	5.0	14.0
08	279.0	151.0	39.0	534.0
09	40.0	18.0	881.0	64.0
10	72.0	106.0	805.0	20.0
11	186.0	9.0	735.0	73.0
12	19.0	28.0	950.0	6.0
13	490.0	198.0	84.0	231.0
14	77.0	169.0	693.0	64.0

PFM

	A	C	G	T
01	0.213	0.204	0.456	0.127
02	0.214	0.085	0.619	0.082
03	0.087	0.538	0.283	0.092
04	0.185	0.317	0.083	0.415
05	0.023	0.851	0.052	0.074
06	0.007	0.938	0.006	0.049
07	0.012	0.969	0.005	0.014
08	0.278	0.151	0.039	0.532
09	0.04	0.018	0.878	0.064
10	0.072	0.106	0.803	0.02
11	0.185	0.009	0.733	0.073
12	0.019	0.028	0.947	0.006
13	0.489	0.197	0.084	0.23
14	0.077	0.168	0.691	0.064

PWM

	A	C	G	T
01	-0.157	-0.2	0.597	-0.674
02	-0.153	-1.069	0.903	-1.104
03	-1.046	0.763	0.124	-0.991
04	-0.296	0.236	-1.092	0.504
05	-2.323	1.221	-1.547	-1.204
06	-3.365	1.317	-3.487	-1.605
07	-2.912	1.35	-3.625	-2.776
08	0.106	-0.503	-1.824	0.752
09	-1.8	-2.549	1.252	-1.346
10	-1.231	-0.852	1.162	-2.453
11	-0.296	-3.158	1.071	-1.217
12	-2.5	-2.139	1.327	-3.487
13	0.667	-0.234	-1.08	-0.081
14	-1.165	-0.391	1.012	-1.346

Standard thresholds

P-value	Threshold
0.001	4.23536
0.0005	5.17666
0.0001	7.12941