ZN418.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN418.H12INVIVO.0.P.B
Gene (human)	ZNF418 (GeneCards)
Gene synonyms (human)	KIAA1956
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	18
Consensus	bTGYTTYYRGCYWCYKvb
GC content	47.61%
Information content (bits; total / per base)	18.177 / 1.01
Data sources	ChIP-Seq
Aligned words	391

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.769	0.953	0.763	0.946	0.761	0.966	4.721	7.412	188.678	208.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.5
HGNC	HGNC:20647
MGI
EntrezGene (human)	GeneID:147686 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN418_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TF45 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN418.H12INVIVO.0.P.B.pcm
PWM	ZN418.H12INVIVO.0.P.B.pwm
PFM	ZN418.H12INVIVO.0.P.B.pfm
Alignment	ZN418.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN418.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN418.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN418.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN418.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN418.H12INVIVO.0.P.B_homer_format_0.001.txt ZN418.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN418.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	20.0	123.0	70.0	178.0
02	5.0	1.0	6.0	379.0
03	15.0	0.0	376.0	0.0
04	10.0	268.0	0.0	113.0
05	3.0	14.0	1.0	373.0
06	2.0	17.0	1.0	371.0
07	10.0	97.0	28.0	256.0
08	22.0	60.0	7.0	302.0
09	222.0	1.0	155.0	13.0
10	3.0	5.0	371.0	12.0
11	7.0	330.0	5.0	49.0
12	2.0	195.0	3.0	191.0
13	75.0	13.0	20.0	283.0
14	11.0	361.0	4.0	15.0
15	51.0	94.0	2.0	244.0
16	26.0	30.0	195.0	140.0
17	127.0	92.0	135.0	37.0
18	42.0	197.0	74.0	78.0

PFM

	A	C	G	T
01	0.051	0.315	0.179	0.455
02	0.013	0.003	0.015	0.969
03	0.038	0.0	0.962	0.0
04	0.026	0.685	0.0	0.289
05	0.008	0.036	0.003	0.954
06	0.005	0.043	0.003	0.949
07	0.026	0.248	0.072	0.655
08	0.056	0.153	0.018	0.772
09	0.568	0.003	0.396	0.033
10	0.008	0.013	0.949	0.031
11	0.018	0.844	0.013	0.125
12	0.005	0.499	0.008	0.488
13	0.192	0.033	0.051	0.724
14	0.028	0.923	0.01	0.038
15	0.13	0.24	0.005	0.624
16	0.066	0.077	0.499	0.358
17	0.325	0.235	0.345	0.095
18	0.107	0.504	0.189	0.199

PWM

	A	C	G	T
01	-1.53	0.227	-0.328	0.593
02	-2.727	-3.684	-2.584	1.344
03	-1.795	-4.197	1.336	-4.197
04	-2.156	0.999	-4.197	0.143
05	-3.095	-1.857	-3.684	1.328
06	-3.347	-1.68	-3.684	1.323
07	-2.156	-0.008	-1.213	0.953
08	-1.441	-0.479	-2.458	1.118
09	0.812	-3.684	0.455	-1.924
10	-3.095	-2.727	1.323	-1.995
11	-2.458	1.206	-2.727	-0.676
12	-3.347	0.683	-3.095	0.662
13	-0.26	-1.924	-1.53	1.053
14	-2.072	1.295	-2.894	-1.795
15	-0.637	-0.039	-3.347	0.906
16	-1.284	-1.148	0.683	0.355
17	0.258	-0.06	0.319	-0.947
18	-0.825	0.693	-0.274	-0.222

Standard thresholds

P-value	Threshold
0.001	1.69151
0.0005	2.98401
0.0001	5.70921