ZN417.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN417.H12INVITRO.0.P.D
Gene (human)	ZNF417 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	15
Consensus	vYWnbTGGCGCChdv
GC content	63.43%
Information content (bits; total / per base)	14.291 / 0.953
Data sources	ChIP-Seq
Aligned words	923

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.973	0.974	0.962	0.965	0.953	0.954	5.634	5.636	556.299	585.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.1
HGNC	HGNC:20646
MGI
EntrezGene (human)	GeneID:147687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN417_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TAU3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN417.H12INVITRO.0.P.D.pcm
PWM	ZN417.H12INVITRO.0.P.D.pwm
PFM	ZN417.H12INVITRO.0.P.D.pfm
Alignment	ZN417.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN417.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN417.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN417.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN417.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN417.H12INVITRO.0.P.D_homer_format_0.001.txt ZN417.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN417.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	222.0	165.0	373.0	163.0
02	111.0	615.0	73.0	124.0
03	712.0	23.0	52.0	136.0
04	168.0	282.0	247.0	226.0
05	88.0	185.0	250.0	400.0
06	8.0	12.0	18.0	885.0
07	23.0	1.0	853.0	46.0
08	9.0	6.0	907.0	1.0
09	6.0	898.0	7.0	12.0
10	105.0	10.0	808.0	0.0
11	1.0	903.0	10.0	9.0
12	8.0	872.0	5.0	38.0
13	152.0	517.0	115.0	139.0
14	498.0	84.0	131.0	210.0
15	413.0	154.0	206.0	150.0

PFM

	A	C	G	T
01	0.241	0.179	0.404	0.177
02	0.12	0.666	0.079	0.134
03	0.771	0.025	0.056	0.147
04	0.182	0.306	0.268	0.245
05	0.095	0.2	0.271	0.433
06	0.009	0.013	0.02	0.959
07	0.025	0.001	0.924	0.05
08	0.01	0.007	0.983	0.001
09	0.007	0.973	0.008	0.013
10	0.114	0.011	0.875	0.0
11	0.001	0.978	0.011	0.01
12	0.009	0.945	0.005	0.041
13	0.165	0.56	0.125	0.151
14	0.54	0.091	0.142	0.228
15	0.447	0.167	0.223	0.163

PWM

	A	C	G	T
01	-0.038	-0.332	0.477	-0.345
02	-0.724	0.976	-1.135	-0.615
03	1.122	-2.242	-1.465	-0.524
04	-0.315	0.199	0.068	-0.021
05	-0.952	-0.219	0.08	0.547
06	-3.176	-2.831	-2.468	1.339
07	-2.242	-4.453	1.302	-1.584
08	-3.078	-3.407	1.363	-4.453
09	-3.407	1.353	-3.285	-2.831
10	-0.779	-2.989	1.248	-4.914
11	-4.453	1.359	-2.989	-3.078
12	-3.176	1.324	-3.546	-1.767
13	-0.414	0.803	-0.689	-0.502
14	0.765	-0.998	-0.561	-0.094
15	0.579	-0.401	-0.113	-0.427

Standard thresholds

P-value	Threshold
0.001	3.16156
0.0005	4.33206
0.0001	6.74336