ZN416.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN416.H12RSNP.0.P.D
Gene (human)	ZNF416 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	TGMYWKRRYYMhRGKRKSSCMWS
GC content	60.98%
Information content (bits; total / per base)	17.521 / 0.762
Data sources	ChIP-Seq
Aligned words	78

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.696	0.772	0.643	0.747	0.677	0.742	6.641	9.285	25.333	38.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.127
HGNC	HGNC:20645
MGI
EntrezGene (human)	GeneID:55659 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN416_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BWM5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN416.H12RSNP.0.P.D.pcm
PWM	ZN416.H12RSNP.0.P.D.pwm
PFM	ZN416.H12RSNP.0.P.D.pfm
Alignment	ZN416.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN416.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN416.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN416.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN416.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN416.H12RSNP.0.P.D_homer_format_0.001.txt ZN416.H12RSNP.0.P.D_homer_format_0.0005.txt ZN416.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	3.0	0.0	7.0	68.0
02	4.0	5.0	68.0	1.0
03	55.0	9.0	8.0	6.0
04	5.0	58.0	7.0	8.0
05	18.0	6.0	5.0	49.0
06	3.0	6.0	59.0	10.0
07	16.0	5.0	50.0	7.0
08	19.0	7.0	51.0	1.0
09	4.0	53.0	2.0	19.0
10	2.0	45.0	1.0	30.0
11	56.0	11.0	6.0	5.0
12	19.0	34.0	8.0	17.0
13	25.0	9.0	41.0	3.0
14	4.0	2.0	63.0	9.0
15	5.0	5.0	60.0	8.0
16	28.0	6.0	39.0	5.0
17	6.0	1.0	16.0	55.0
18	3.0	9.0	59.0	7.0
19	4.0	58.0	11.0	5.0
20	7.0	62.0	3.0	6.0
21	12.0	53.0	9.0	4.0
22	54.0	5.0	4.0	15.0
23	5.0	9.0	59.0	5.0

PFM

	A	C	G	T
01	0.038	0.0	0.09	0.872
02	0.051	0.064	0.872	0.013
03	0.705	0.115	0.103	0.077
04	0.064	0.744	0.09	0.103
05	0.231	0.077	0.064	0.628
06	0.038	0.077	0.756	0.128
07	0.205	0.064	0.641	0.09
08	0.244	0.09	0.654	0.013
09	0.051	0.679	0.026	0.244
10	0.026	0.577	0.013	0.385
11	0.718	0.141	0.077	0.064
12	0.244	0.436	0.103	0.218
13	0.321	0.115	0.526	0.038
14	0.051	0.026	0.808	0.115
15	0.064	0.064	0.769	0.103
16	0.359	0.077	0.5	0.064
17	0.077	0.013	0.205	0.705
18	0.038	0.115	0.756	0.09
19	0.051	0.744	0.141	0.064
20	0.09	0.795	0.038	0.077
21	0.154	0.679	0.115	0.051
22	0.692	0.064	0.051	0.192
23	0.064	0.115	0.756	0.064

PWM

	A	C	G	T
01	-1.616	-2.939	-0.934	1.211
02	-1.398	-1.218	1.211	-2.288
03	1.002	-0.713	-0.818	-1.066
04	-1.218	1.054	-0.934	-0.818
05	-0.076	-1.066	-1.218	0.889
06	-1.616	-1.066	1.071	-0.619
07	-0.186	-1.218	0.909	-0.934
08	-0.025	-0.934	0.928	-2.288
09	-1.398	0.966	-1.897	-0.025
10	-1.897	0.806	-2.288	0.412
11	1.02	-0.532	-1.066	-1.218
12	-0.025	0.533	-0.818	-0.129
13	0.237	-0.713	0.715	-1.616
14	-1.398	-1.897	1.136	-0.713
15	-1.218	-1.218	1.088	-0.818
16	0.346	-1.066	0.666	-1.218
17	-1.066	-2.288	-0.186	1.002
18	-1.616	-0.713	1.071	-0.934
19	-1.398	1.054	-0.532	-1.218
20	-0.934	1.12	-1.616	-1.066
21	-0.453	0.966	-0.713	-1.398
22	0.984	-1.218	-1.398	-0.247
23	-1.218	-0.713	1.071	-1.218

Standard thresholds

P-value	Threshold
0.001	3.32746
0.0005	4.32461
0.0001	6.46101