MotifZN416.H12INVIVO.0.P.C
Gene (human)ZNF416
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length23
ConsensusTGMYWKRRYYMhRGKRKSSCMWS
GC content60.98%
Information content (bits; total / per base)17.521 / 0.762
Data sourcesChIP-Seq
Aligned words78

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.696 0.772 0.643 0.747 0.677 0.742 6.641 9.285 25.333 38.824
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.127
HGNCHGNC:20645
MGI
EntrezGene (human)GeneID:55659
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN416_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q9BWM5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
013.00.07.068.0
024.05.068.01.0
0355.09.08.06.0
045.058.07.08.0
0518.06.05.049.0
063.06.059.010.0
0716.05.050.07.0
0819.07.051.01.0
094.053.02.019.0
102.045.01.030.0
1156.011.06.05.0
1219.034.08.017.0
1325.09.041.03.0
144.02.063.09.0
155.05.060.08.0
1628.06.039.05.0
176.01.016.055.0
183.09.059.07.0
194.058.011.05.0
207.062.03.06.0
2112.053.09.04.0
2254.05.04.015.0
235.09.059.05.0
PFM
ACGT
010.0380.00.090.872
020.0510.0640.8720.013
030.7050.1150.1030.077
040.0640.7440.090.103
050.2310.0770.0640.628
060.0380.0770.7560.128
070.2050.0640.6410.09
080.2440.090.6540.013
090.0510.6790.0260.244
100.0260.5770.0130.385
110.7180.1410.0770.064
120.2440.4360.1030.218
130.3210.1150.5260.038
140.0510.0260.8080.115
150.0640.0640.7690.103
160.3590.0770.50.064
170.0770.0130.2050.705
180.0380.1150.7560.09
190.0510.7440.1410.064
200.090.7950.0380.077
210.1540.6790.1150.051
220.6920.0640.0510.192
230.0640.1150.7560.064
PWM
ACGT
01-1.616-2.939-0.9341.211
02-1.398-1.2181.211-2.288
031.002-0.713-0.818-1.066
04-1.2181.054-0.934-0.818
05-0.076-1.066-1.2180.889
06-1.616-1.0661.071-0.619
07-0.186-1.2180.909-0.934
08-0.025-0.9340.928-2.288
09-1.3980.966-1.897-0.025
10-1.8970.806-2.2880.412
111.02-0.532-1.066-1.218
12-0.0250.533-0.818-0.129
130.237-0.7130.715-1.616
14-1.398-1.8971.136-0.713
15-1.218-1.2181.088-0.818
160.346-1.0660.666-1.218
17-1.066-2.288-0.1861.002
18-1.616-0.7131.071-0.934
19-1.3981.054-0.532-1.218
20-0.9341.12-1.616-1.066
21-0.4530.966-0.713-1.398
220.984-1.218-1.398-0.247
23-1.218-0.7131.071-1.218
Standard thresholds
P-value Threshold
0.001 3.32746
0.0005 4.32461
0.0001 6.46101