MotifZN410.H12INVITRO.0.SM.B
Gene (human)ZNF410
(GeneCards)
Gene synonyms (human)APA1
Gene (mouse)Znf410
Gene synonyms (mouse)Apa1, D12Ertd748e, Zfp410
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length15
ConsensusnYATTATGGGATGbn
GC content36.93%
Information content (bits; total / per base)21.286 / 1.419
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9118

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.811 0.828 0.772 0.786 0.721 0.737
best 1.0 1.0 1.0 1.0 0.941 0.951
Methyl HT-SELEX, 1 experiments median 1.0 1.0 1.0 1.0 0.923 0.936
best 1.0 1.0 1.0 1.0 0.923 0.936
Non-Methyl HT-SELEX, 3 experiments median 0.621 0.656 0.545 0.573 0.519 0.539
best 1.0 1.0 1.0 1.0 0.941 0.951
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyMTF1-like {2.3.3.24} (TFClass)
TFClass IDTFClass: 2.3.3.24.2
HGNCHGNC:20144
MGIMGI:1289280
EntrezGene (human)GeneID:57862
(SSTAR profile)
EntrezGene (mouse)GeneID:52708
(SSTAR profile)
UniProt ID (human)ZN410_HUMAN
UniProt ID (mouse)ZN410_MOUSE
UniProt AC (human)Q86VK4
(TFClass)
UniProt AC (mouse)Q8BKX7
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012263.251833.252408.252613.25
02549.5754.5468.57345.5
039094.03.011.010.0
043.08.02.09105.0
053.02.00.09113.0
069109.03.04.02.0
070.02.00.09116.0
083.00.09115.00.0
090.01.09116.01.0
106.03.08627.0482.0
117925.0815.076.0302.0
1225.020.06.09067.0
131875.012.07100.0131.0
14268.02254.03250.03346.0
152199.752188.752429.752299.75
PFM
ACGT
010.2480.2010.2640.287
020.060.0830.0510.806
030.9970.00.0010.001
040.00.0010.00.999
050.00.00.00.999
060.9990.00.00.0
070.00.00.01.0
080.00.01.00.0
090.00.01.00.0
100.0010.00.9460.053
110.8690.0890.0080.033
120.0030.0020.0010.994
130.2060.0010.7790.014
140.0290.2470.3560.367
150.2410.240.2660.252
PWM
ACGT
01-0.007-0.2180.0550.137
02-1.42-1.104-1.5781.169
031.383-6.069-5.146-5.225
04-6.069-5.403-6.2791.384
05-6.069-6.279-6.9091.385
061.385-6.069-5.895-6.279
07-6.909-6.279-6.9091.385
08-6.069-6.9091.385-6.909
09-6.909-6.5451.385-6.545
10-5.619-6.0691.33-1.55
111.245-1.027-3.372-2.015
12-4.427-4.629-5.6191.38
13-0.195-5.0741.135-2.84
14-2.133-0.0110.3540.383
15-0.036-0.0410.0640.009
Standard thresholds
P-value Threshold
0.001 -6.40574
0.0005 -4.13964
0.0001 0.47516