ZN407.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN407.H12INVITRO.0.P.D
Gene (human)	ZNF407 (GeneCards)
Gene synonyms (human)	KIAA1703
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	nhbYKdbYChbbbvRSbYnCCGTMv
GC content	64.02%
Information content (bits; total / per base)	14.532 / 0.581
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (14)	0.882	0.922	0.839	0.879	0.878	0.933	4.823	5.548	266.563	391.444

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.73
HGNC	HGNC:19904
MGI
EntrezGene (human)	GeneID:55628 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN407_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9C0G0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	no

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN407.H12INVITRO.0.P.D.pcm
PWM	ZN407.H12INVITRO.0.P.D.pwm
PFM	ZN407.H12INVITRO.0.P.D.pfm
Alignment	ZN407.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN407.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN407.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN407.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN407.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN407.H12INVITRO.0.P.D_homer_format_0.001.txt ZN407.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN407.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	179.0	164.0	333.0	323.0
02	175.0	279.0	143.0	402.0
03	149.0	232.0	151.0	467.0
04	76.0	173.0	132.0	618.0
05	54.0	91.0	728.0	126.0
06	231.0	127.0	354.0	287.0
07	93.0	572.0	183.0	151.0
08	40.0	752.0	79.0	128.0
09	20.0	787.0	42.0	150.0
10	120.0	406.0	102.0	371.0
11	130.0	322.0	149.0	398.0
12	120.0	418.0	254.0	207.0
13	66.0	450.0	209.0	274.0
14	97.0	501.0	332.0	69.0
15	189.0	104.0	668.0	38.0
16	19.0	287.0	667.0	26.0
17	79.0	578.0	169.0	173.0
18	137.0	533.0	28.0	301.0
19	172.0	238.0	244.0	345.0
20	5.0	971.0	4.0	19.0
21	12.0	946.0	10.0	31.0
22	76.0	26.0	852.0	45.0
23	3.0	25.0	29.0	942.0
24	592.0	291.0	33.0	83.0
25	99.0	297.0	523.0	80.0

PFM

	A	C	G	T
01	0.179	0.164	0.333	0.323
02	0.175	0.279	0.143	0.402
03	0.149	0.232	0.151	0.467
04	0.076	0.173	0.132	0.619
05	0.054	0.091	0.729	0.126
06	0.231	0.127	0.354	0.287
07	0.093	0.573	0.183	0.151
08	0.04	0.753	0.079	0.128
09	0.02	0.788	0.042	0.15
10	0.12	0.406	0.102	0.371
11	0.13	0.322	0.149	0.398
12	0.12	0.418	0.254	0.207
13	0.066	0.45	0.209	0.274
14	0.097	0.502	0.332	0.069
15	0.189	0.104	0.669	0.038
16	0.019	0.287	0.668	0.026
17	0.079	0.579	0.169	0.173
18	0.137	0.534	0.028	0.301
19	0.172	0.238	0.244	0.345
20	0.005	0.972	0.004	0.019
21	0.012	0.947	0.01	0.031
22	0.076	0.026	0.853	0.045
23	0.003	0.025	0.029	0.943
24	0.593	0.291	0.033	0.083
25	0.099	0.297	0.524	0.08

PWM

	A	C	G	T
01	-0.33	-0.417	0.286	0.256
02	-0.353	0.11	-0.553	0.473
03	-0.512	-0.073	-0.499	0.623
04	-1.174	-0.364	-0.632	0.902
05	-1.507	-0.998	1.065	-0.677
06	-0.077	-0.67	0.347	0.138
07	-0.976	0.825	-0.308	-0.499
08	-1.796	1.098	-1.136	-0.662
09	-2.449	1.143	-1.749	-0.505
10	-0.726	0.483	-0.886	0.393
11	-0.647	0.253	-0.512	0.463
12	-0.726	0.512	0.017	-0.186
13	-1.312	0.586	-0.177	0.092
14	-0.935	0.693	0.283	-1.269
15	-0.277	-0.866	0.98	-1.845
16	-2.496	0.138	0.978	-2.205
17	-1.136	0.835	-0.387	-0.364
18	-0.595	0.754	-2.135	0.185
19	-0.37	-0.048	-0.023	0.321
20	-3.621	1.353	-3.782	-2.496
21	-2.908	1.327	-3.065	-2.039
22	-1.174	-2.205	1.222	-1.683
23	-3.974	-2.242	-2.102	1.322
24	0.859	0.152	-1.98	-1.088
25	-0.915	0.172	0.736	-1.124

Standard thresholds

P-value	Threshold
0.001	3.49121
0.0005	4.52876
0.0001	6.70976