ZN394.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN394.H12INVIVO.0.P.C
Gene (human)	ZNF394 (GeneCards)
Gene synonyms (human)	ZKSCAN14
Gene (mouse)	Znf394
Gene synonyms (mouse)	Zfp94, Zfp99, Zkscan14
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	19
Consensus	vnnbvnGGAGhAGCKSvvv
GC content	63.24%
Information content (bits; total / per base)	14.54 / 0.765
Data sources	ChIP-Seq
Aligned words	402

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.588	0.736	0.506	0.674	0.82	0.902	3.573	4.837	47.0	94.456

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.40
HGNC	HGNC:18832
MGI	MGI:1914485
EntrezGene (human)	GeneID:84124 (SSTAR profile)
EntrezGene (mouse)	GeneID:67235 (SSTAR profile)
UniProt ID (human)	ZN394_HUMAN
UniProt ID (mouse)	ZN394_MOUSE
UniProt AC (human)	Q53GI3 (TFClass)
UniProt AC (mouse)	Q9Z1D9 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN394.H12INVIVO.0.P.C.pcm
PWM	ZN394.H12INVIVO.0.P.C.pwm
PFM	ZN394.H12INVIVO.0.P.C.pfm
Alignment	ZN394.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN394.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN394.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN394.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN394.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN394.H12INVIVO.0.P.C_homer_format_0.001.txt ZN394.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN394.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	49.0	107.0	198.0	48.0
02	71.0	125.0	135.0	71.0
03	92.0	104.0	148.0	58.0
04	62.0	89.0	188.0	63.0
05	91.0	118.0	166.0	27.0
06	117.0	65.0	144.0	76.0
07	67.0	14.0	315.0	6.0
08	11.0	0.0	391.0	0.0
09	397.0	1.0	3.0	1.0
10	2.0	1.0	393.0	6.0
11	158.0	59.0	38.0	147.0
12	391.0	5.0	3.0	3.0
13	6.0	16.0	363.0	17.0
14	1.0	389.0	11.0	1.0
15	38.0	26.0	78.0	260.0
16	12.0	39.0	319.0	32.0
17	87.0	96.0	176.0	43.0
18	98.0	69.0	189.0	46.0
19	93.0	84.0	165.0	60.0

PFM

	A	C	G	T
01	0.122	0.266	0.493	0.119
02	0.177	0.311	0.336	0.177
03	0.229	0.259	0.368	0.144
04	0.154	0.221	0.468	0.157
05	0.226	0.294	0.413	0.067
06	0.291	0.162	0.358	0.189
07	0.167	0.035	0.784	0.015
08	0.027	0.0	0.973	0.0
09	0.988	0.002	0.007	0.002
10	0.005	0.002	0.978	0.015
11	0.393	0.147	0.095	0.366
12	0.973	0.012	0.007	0.007
13	0.015	0.04	0.903	0.042
14	0.002	0.968	0.027	0.002
15	0.095	0.065	0.194	0.647
16	0.03	0.097	0.794	0.08
17	0.216	0.239	0.438	0.107
18	0.244	0.172	0.47	0.114
19	0.231	0.209	0.41	0.149

PWM

	A	C	G	T
01	-0.703	0.062	0.671	-0.723
02	-0.341	0.215	0.291	-0.341
03	-0.087	0.034	0.382	-0.539
04	-0.474	-0.12	0.619	-0.458
05	-0.098	0.158	0.496	-1.275
06	0.15	-0.428	0.355	-0.275
07	-0.398	-1.884	1.132	-2.61
08	-2.099	-4.22	1.348	-4.22
09	1.363	-3.709	-3.121	-3.709
10	-3.372	-3.709	1.353	-2.61
11	0.447	-0.522	-0.949	0.376
12	1.348	-2.753	-3.121	-3.121
13	-2.61	-1.763	1.274	-1.707
14	-3.709	1.342	-2.099	-3.709
15	-0.949	-1.311	-0.249	0.941
16	-2.022	-0.924	1.145	-1.113
17	-0.142	-0.045	0.554	-0.829
18	-0.025	-0.369	0.625	-0.764
19	-0.076	-0.176	0.49	-0.506

Standard thresholds

P-value	Threshold
0.001	3.26406
0.0005	4.40226
0.0001	6.77091