ZN383.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN383.H12INVIVO.0.P.C
Gene (human)	ZNF383 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	RvRGAGSvRvRRbvbRSvRRSvv
GC content	61.91%
Information content (bits; total / per base)	12.758 / 0.555
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.805	0.824	0.727	0.747	0.841	0.86	4.76	5.005	140.055	145.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF620-like {2.3.3.35} (TFClass)
TFClass ID	TFClass: 2.3.3.35.5
HGNC	HGNC:18609
MGI
EntrezGene (human)	GeneID:163087 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN383_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NA42 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN383.H12INVIVO.0.P.C.pcm
PWM	ZN383.H12INVIVO.0.P.C.pwm
PFM	ZN383.H12INVIVO.0.P.C.pfm
Alignment	ZN383.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN383.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN383.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN383.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN383.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN383.H12INVIVO.0.P.C_homer_format_0.001.txt ZN383.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN383.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	175.0	140.0	616.0	69.0
02	213.0	454.0	185.0	148.0
03	337.0	37.0	511.0	115.0
04	27.0	19.0	947.0	7.0
05	899.0	32.0	50.0	19.0
06	77.0	18.0	866.0	39.0
07	78.0	640.0	206.0	76.0
08	304.0	357.0	230.0	109.0
09	558.0	100.0	297.0	45.0
10	178.0	399.0	346.0	77.0
11	547.0	69.0	341.0	43.0
12	605.0	95.0	266.0	34.0
13	128.0	227.0	515.0	130.0
14	415.0	126.0	349.0	110.0
15	81.0	195.0	374.0	350.0
16	163.0	91.0	640.0	106.0
17	100.0	118.0	733.0	49.0
18	535.0	248.0	184.0	33.0
19	525.0	88.0	351.0	36.0
20	206.0	56.0	672.0	66.0
21	91.0	95.0	762.0	52.0
22	395.0	176.0	372.0	57.0
23	279.0	96.0	550.0	75.0

PFM

	A	C	G	T
01	0.175	0.14	0.616	0.069
02	0.213	0.454	0.185	0.148
03	0.337	0.037	0.511	0.115
04	0.027	0.019	0.947	0.007
05	0.899	0.032	0.05	0.019
06	0.077	0.018	0.866	0.039
07	0.078	0.64	0.206	0.076
08	0.304	0.357	0.23	0.109
09	0.558	0.1	0.297	0.045
10	0.178	0.399	0.346	0.077
11	0.547	0.069	0.341	0.043
12	0.605	0.095	0.266	0.034
13	0.128	0.227	0.515	0.13
14	0.415	0.126	0.349	0.11
15	0.081	0.195	0.374	0.35
16	0.163	0.091	0.64	0.106
17	0.1	0.118	0.733	0.049
18	0.535	0.248	0.184	0.033
19	0.525	0.088	0.351	0.036
20	0.206	0.056	0.672	0.066
21	0.091	0.095	0.762	0.052
22	0.395	0.176	0.372	0.057
23	0.279	0.096	0.55	0.075

PWM

	A	C	G	T
01	-0.354	-0.574	0.898	-1.27
02	-0.159	0.594	-0.299	-0.52
03	0.297	-1.872	0.711	-0.769
04	-2.171	-2.497	1.327	-3.362
05	1.275	-2.01	-1.582	-2.497
06	-1.162	-2.546	1.238	-1.821
07	-1.15	0.936	-0.192	-1.175
08	0.194	0.354	-0.083	-0.821
09	0.799	-0.906	0.171	-1.684
10	-0.337	0.465	0.323	-1.162
11	0.779	-1.27	0.309	-1.728
12	0.88	-0.956	0.062	-1.952
13	-0.663	-0.096	0.719	-0.648
14	0.504	-0.678	0.332	-0.812
15	-1.113	-0.247	0.401	0.335
16	-0.424	-0.999	0.936	-0.849
17	-0.906	-0.743	1.071	-1.602
18	0.757	-0.008	-0.304	-1.981
19	0.738	-1.032	0.337	-1.898
20	-0.192	-1.473	0.984	-1.313
21	-0.999	-0.956	1.11	-1.544
22	0.455	-0.348	0.395	-1.455
23	0.109	-0.946	0.785	-1.188

Standard thresholds

P-value	Threshold
0.001	4.08771
0.0005	5.00496
0.0001	6.94301