ZN382.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN382.H12INVITRO.0.P.D
Gene (human)	ZNF382 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf382
Gene synonyms (mouse)	Zfp382
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YRYdRKdYCKGTWSTRvTKYCYC
GC content	46.78%
Information content (bits; total / per base)	19.081 / 0.83
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	3 (11)	0.974	0.988	0.966	0.986	0.979	0.991	11.098	13.2	611.377	753.161

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.644	2.0	0.188	0.157

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.5
HGNC	HGNC:17409
MGI	MGI:3588204
EntrezGene (human)	GeneID:84911 (SSTAR profile)
EntrezGene (mouse)	GeneID:233060 (SSTAR profile)
UniProt ID (human)	ZN382_HUMAN
UniProt ID (mouse)	ZN382_MOUSE
UniProt AC (human)	Q96SR6 (TFClass)
UniProt AC (mouse)	B2RXC5 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	3 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN382.H12INVITRO.0.P.D.pcm
PWM	ZN382.H12INVITRO.0.P.D.pwm
PFM	ZN382.H12INVITRO.0.P.D.pfm
Alignment	ZN382.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN382.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN382.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN382.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN382.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN382.H12INVITRO.0.P.D_homer_format_0.001.txt ZN382.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN382.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	67.0	182.0	80.0	671.0
02	191.0	87.0	646.0	76.0
03	59.0	112.0	81.0	748.0
04	467.0	43.0	277.0	213.0
05	161.0	29.0	697.0	113.0
06	72.0	59.0	644.0	225.0
07	381.0	73.0	467.0	79.0
08	91.0	131.0	48.0	730.0
09	31.25	826.25	20.25	122.25
10	96.25	57.25	124.25	722.25
11	44.25	37.25	905.25	13.25
12	7.25	14.25	10.25	968.25
13	677.25	8.25	147.25	167.25
14	65.25	199.25	694.25	41.25
15	13.25	19.25	15.25	952.25
16	390.25	13.25	540.25	56.25
17	594.25	135.25	169.25	101.25
18	26.25	52.25	24.25	897.25
19	129.25	23.25	696.25	151.25
20	48.25	190.25	169.25	592.25
21	73.25	810.25	20.25	96.25
22	114.25	311.25	23.25	551.25
23	44.25	821.25	24.25	110.25

PFM

	A	C	G	T
01	0.067	0.182	0.08	0.671
02	0.191	0.087	0.646	0.076
03	0.059	0.112	0.081	0.748
04	0.467	0.043	0.277	0.213
05	0.161	0.029	0.697	0.113
06	0.072	0.059	0.644	0.225
07	0.381	0.073	0.467	0.079
08	0.091	0.131	0.048	0.73
09	0.031	0.826	0.02	0.122
10	0.096	0.057	0.124	0.722
11	0.044	0.037	0.905	0.013
12	0.007	0.014	0.01	0.968
13	0.677	0.008	0.147	0.167
14	0.065	0.199	0.694	0.041
15	0.013	0.019	0.015	0.952
16	0.39	0.013	0.54	0.056
17	0.594	0.135	0.169	0.101
18	0.026	0.052	0.024	0.897
19	0.129	0.023	0.696	0.151
20	0.048	0.19	0.169	0.592
21	0.073	0.81	0.02	0.096
22	0.114	0.311	0.023	0.551
23	0.044	0.821	0.024	0.11

PWM

	A	C	G	T
01	-1.298	-0.315	-1.125	0.983
02	-0.267	-1.043	0.945	-1.175
03	-1.422	-0.795	-1.113	1.091
04	0.622	-1.728	0.102	-0.159
05	-0.436	-2.103	1.021	-0.786
06	-1.228	-1.422	0.942	-0.105
07	0.419	-1.215	0.622	-1.137
08	-0.999	-0.64	-1.622	1.067
09	-2.033	1.191	-2.438	-0.708
10	-0.944	-1.451	-0.692	1.056
11	-1.7	-1.865	1.282	-2.822
12	-3.334	-2.757	-3.045	1.349
13	0.992	-3.228	-0.525	-0.399
14	-1.324	-0.225	1.017	-1.768
15	-2.822	-2.485	-2.696	1.332
16	0.443	-2.822	0.767	-1.468
17	0.862	-0.609	-0.387	-0.894
18	-2.197	-1.54	-2.271	1.273
19	-0.653	-2.31	1.02	-0.498
20	-1.617	-0.271	-0.387	0.858
21	-1.211	1.171	-2.438	-0.944
22	-0.775	0.218	-2.31	0.787
23	-1.7	1.185	-2.271	-0.81

Standard thresholds

P-value	Threshold
0.001	1.88651
0.0005	3.07596
0.0001	5.61216