ZN37A.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN37A.H12INVITRO.0.P.D
Gene (human)	ZNF37A (GeneCards)
Gene synonyms (human)	KOX21, ZNF37
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GbGAGGGAGCTGGGGTATTKATM
GC content	50.92%
Information content (bits; total / per base)	32.506 / 1.413
Data sources	ChIP-Seq
Aligned words	233

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.741	0.856	0.739	0.858	0.783	0.886	9.388	12.787	173.222	271.495

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF37A-like {2.3.4.25} (TFClass)
TFClass ID	TFClass: 2.3.4.25.1
HGNC	HGNC:13102
MGI
EntrezGene (human)	GeneID:7587 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN37A_HUMAN
UniProt ID (mouse)
UniProt AC (human)	P17032 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN37A.H12INVITRO.0.P.D.pcm
PWM	ZN37A.H12INVITRO.0.P.D.pwm
PFM	ZN37A.H12INVITRO.0.P.D.pfm
Alignment	ZN37A.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN37A.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN37A.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN37A.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN37A.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN37A.H12INVITRO.0.P.D_homer_format_0.001.txt ZN37A.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN37A.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	18.0	3.0	208.0	4.0
02	34.0	58.0	48.0	93.0
03	40.0	4.0	183.0	6.0
04	208.0	0.0	14.0	11.0
05	9.0	1.0	219.0	4.0
06	14.0	0.0	218.0	1.0
07	8.0	1.0	221.0	3.0
08	232.0	1.0	0.0	0.0
09	3.0	2.0	221.0	7.0
10	0.0	199.0	4.0	30.0
11	8.0	9.0	10.0	206.0
12	0.0	0.0	233.0	0.0
13	21.0	2.0	205.0	5.0
14	2.0	0.0	230.0	1.0
15	17.0	1.0	214.0	1.0
16	6.0	13.0	2.0	212.0
17	222.0	3.0	8.0	0.0
18	5.0	9.0	10.0	209.0
19	6.0	3.0	15.0	209.0
20	10.0	3.0	46.0	174.0
21	219.0	2.0	11.0	1.0
22	2.0	17.0	4.0	210.0
23	157.0	60.0	14.0	2.0

PFM

	A	C	G	T
01	0.077	0.013	0.893	0.017
02	0.146	0.249	0.206	0.399
03	0.172	0.017	0.785	0.026
04	0.893	0.0	0.06	0.047
05	0.039	0.004	0.94	0.017
06	0.06	0.0	0.936	0.004
07	0.034	0.004	0.948	0.013
08	0.996	0.004	0.0	0.0
09	0.013	0.009	0.948	0.03
10	0.0	0.854	0.017	0.129
11	0.034	0.039	0.043	0.884
12	0.0	0.0	1.0	0.0
13	0.09	0.009	0.88	0.021
14	0.009	0.0	0.987	0.004
15	0.073	0.004	0.918	0.004
16	0.026	0.056	0.009	0.91
17	0.953	0.013	0.034	0.0
18	0.021	0.039	0.043	0.897
19	0.026	0.013	0.064	0.897
20	0.043	0.013	0.197	0.747
21	0.94	0.009	0.047	0.004
22	0.009	0.073	0.017	0.901
23	0.674	0.258	0.06	0.009

PWM

	A	C	G	T
01	-1.125	-2.615	1.256	-2.408
02	-0.522	-0.004	-0.189	0.459
03	-0.365	-2.408	1.129	-2.091
04	1.256	-3.778	-1.356	-1.573
05	-1.75	-3.228	1.307	-2.408
06	-1.356	-3.778	1.303	-3.228
07	-1.851	-3.228	1.316	-2.615
08	1.365	-3.228	-3.778	-3.778
09	-2.615	-2.875	1.316	-1.964
10	-3.778	1.212	-2.408	-0.642
11	-1.851	-1.75	-1.658	1.247
12	-3.778	-3.778	1.369	-3.778
13	-0.98	-2.875	1.242	-2.237
14	-2.875	-3.778	1.356	-3.228
15	-1.178	-3.228	1.284	-3.228
16	-2.091	-1.423	-2.875	1.275
17	1.321	-2.615	-1.851	-3.778
18	-2.237	-1.75	-1.658	1.261
19	-2.091	-2.615	-1.293	1.261
20	-1.658	-2.615	-0.23	1.079
21	1.307	-2.875	-1.573	-3.228
22	-2.875	-1.178	-2.408	1.266
23	0.977	0.029	-1.356	-2.875

Standard thresholds

P-value	Threshold
0.001	-5.72194
0.0005	-3.99744
0.0001	-0.29079