ZN362.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN362.H12CORE.0.P.C
Gene (human)	ZNF362 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	MMAAAAAAAAAAAAAAAAAAAAK
GC content	11.17%
Information content (bits; total / per base)	30.031 / 1.306
Data sources	ChIP-Seq
Aligned words	934

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (6)	0.938	0.956	0.912	0.926	0.946	0.977	12.146	13.588	171.529	213.42

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF362-like {2.3.3.37} (TFClass)
TFClass ID	TFClass: 2.3.3.37.1
HGNC	HGNC:18079
MGI
EntrezGene (human)	GeneID:149076 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN362_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5T0B9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN362.H12CORE.0.P.C.pcm
PWM	ZN362.H12CORE.0.P.C.pwm
PFM	ZN362.H12CORE.0.P.C.pfm
Alignment	ZN362.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN362.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN362.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN362.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN362.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN362.H12CORE.0.P.C_homer_format_0.001.txt ZN362.H12CORE.0.P.C_homer_format_0.0005.txt ZN362.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	673.0	127.0	53.0	81.0
02	753.0	81.0	46.0	54.0
03	773.0	57.0	58.0	46.0
04	791.0	37.0	59.0	47.0
05	825.0	29.0	38.0	42.0
06	840.0	30.0	37.0	27.0
07	845.0	19.0	50.0	20.0
08	815.0	23.0	76.0	20.0
09	826.0	35.0	50.0	23.0
10	818.0	44.0	46.0	26.0
11	858.0	26.0	34.0	16.0
12	826.0	35.0	54.0	19.0
13	855.0	27.0	37.0	15.0
14	824.0	32.0	60.0	18.0
15	840.0	24.0	59.0	11.0
16	869.0	24.0	35.0	6.0
17	870.0	14.0	31.0	19.0
18	852.0	19.0	37.0	26.0
19	853.0	35.0	31.0	15.0
20	838.0	39.0	29.0	28.0
21	845.0	40.0	23.0	26.0
22	933.0	1.0	0.0	0.0
23	1.0	184.0	474.0	275.0

PFM

	A	C	G	T
01	0.721	0.136	0.057	0.087
02	0.806	0.087	0.049	0.058
03	0.828	0.061	0.062	0.049
04	0.847	0.04	0.063	0.05
05	0.883	0.031	0.041	0.045
06	0.899	0.032	0.04	0.029
07	0.905	0.02	0.054	0.021
08	0.873	0.025	0.081	0.021
09	0.884	0.037	0.054	0.025
10	0.876	0.047	0.049	0.028
11	0.919	0.028	0.036	0.017
12	0.884	0.037	0.058	0.02
13	0.915	0.029	0.04	0.016
14	0.882	0.034	0.064	0.019
15	0.899	0.026	0.063	0.012
16	0.93	0.026	0.037	0.006
17	0.931	0.015	0.033	0.02
18	0.912	0.02	0.04	0.028
19	0.913	0.037	0.033	0.016
20	0.897	0.042	0.031	0.03
21	0.905	0.043	0.025	0.028
22	0.999	0.001	0.0	0.0
23	0.001	0.197	0.507	0.294

PWM

	A	C	G	T
01	1.054	-0.603	-1.458	-1.045
02	1.166	-1.045	-1.595	-1.44
03	1.192	-1.388	-1.371	-1.595
04	1.215	-1.804	-1.354	-1.575
05	1.257	-2.036	-1.779	-1.683
06	1.275	-2.004	-1.804	-2.103
07	1.281	-2.43	-1.515	-2.383
08	1.245	-2.253	-1.107	-2.383
09	1.258	-1.857	-1.515	-2.253
10	1.248	-1.638	-1.595	-2.139
11	1.296	-2.139	-1.885	-2.586
12	1.258	-1.857	-1.44	-2.43
13	1.293	-2.103	-1.804	-2.644
14	1.256	-1.943	-1.338	-2.479
15	1.275	-2.214	-1.354	-2.918
16	1.309	-2.214	-1.857	-3.418
17	1.31	-2.706	-1.973	-2.43
18	1.289	-2.43	-1.804	-2.139
19	1.29	-1.857	-1.973	-2.644
20	1.273	-1.754	-2.036	-2.069
21	1.281	-1.73	-2.253	-2.139
22	1.38	-4.464	-4.924	-4.924
23	-4.464	-0.236	0.704	0.162

Standard thresholds

P-value	Threshold
0.001	-3.88744
0.0005	-2.32039
0.0001	1.07951