ZN350.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN350.H12RSNP.0.P.D
Gene (human)	ZNF350 (GeneCards)
Gene synonyms (human)	ZBRK1
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	hdKbYYTTTTWWdMYYhv
GC content	37.83%
Information content (bits; total / per base)	11.587 / 0.644
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.711	0.767	0.651	0.711	0.743	0.79	3.597	3.861	147.194	235.208

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF350-like {2.3.3.30} (TFClass)
TFClass ID	TFClass: 2.3.3.30.1
HGNC	HGNC:16656
MGI
EntrezGene (human)	GeneID:59348 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN350_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9GZX5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN350.H12RSNP.0.P.D.pcm
PWM	ZN350.H12RSNP.0.P.D.pwm
PFM	ZN350.H12RSNP.0.P.D.pfm
Alignment	ZN350.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN350.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN350.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN350.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN350.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN350.H12RSNP.0.P.D_homer_format_0.001.txt ZN350.H12RSNP.0.P.D_homer_format_0.0005.txt ZN350.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	267.0	463.0	133.0	137.0
02	448.0	55.0	204.0	293.0
03	68.0	83.0	595.0	254.0
04	120.0	422.0	141.0	317.0
05	68.0	566.0	68.0	298.0
06	87.0	511.0	19.0	383.0
07	16.0	105.0	10.0	869.0
08	0.0	5.0	6.0	989.0
09	3.0	31.0	16.0	950.0
10	45.0	30.0	93.0	832.0
11	653.0	104.0	83.0	160.0
12	113.0	49.0	110.0	728.0
13	270.0	48.0	500.0	182.0
14	632.0	190.0	90.0	88.0
15	103.0	611.0	89.0	197.0
16	76.0	603.0	105.0	216.0
17	318.0	229.0	95.0	358.0
18	521.0	159.0	189.0	131.0

PFM

	A	C	G	T
01	0.267	0.463	0.133	0.137
02	0.448	0.055	0.204	0.293
03	0.068	0.083	0.595	0.254
04	0.12	0.422	0.141	0.317
05	0.068	0.566	0.068	0.298
06	0.087	0.511	0.019	0.383
07	0.016	0.105	0.01	0.869
08	0.0	0.005	0.006	0.989
09	0.003	0.031	0.016	0.95
10	0.045	0.03	0.093	0.832
11	0.653	0.104	0.083	0.16
12	0.113	0.049	0.11	0.728
13	0.27	0.048	0.5	0.182
14	0.632	0.19	0.09	0.088
15	0.103	0.611	0.089	0.197
16	0.076	0.603	0.105	0.216
17	0.318	0.229	0.095	0.358
18	0.521	0.159	0.189	0.131

PWM

	A	C	G	T
01	0.065	0.613	-0.625	-0.596
02	0.58	-1.49	-0.202	0.158
03	-1.284	-1.089	0.863	0.016
04	-0.727	0.521	-0.567	0.236
05	-1.284	0.813	-1.284	0.175
06	-1.043	0.711	-2.497	0.424
07	-2.653	-0.858	-3.066	1.241
08	-4.982	-3.622	-3.484	1.37
09	-3.975	-2.04	-2.653	1.33
10	-1.684	-2.071	-0.977	1.198
11	0.956	-0.867	-1.089	-0.442
12	-0.786	-1.602	-0.812	1.064
13	0.076	-1.622	0.69	-0.315
14	0.923	-0.272	-1.01	-1.032
15	-0.877	0.89	-1.02	-0.236
16	-1.175	0.876	-0.858	-0.145
17	0.239	-0.087	-0.956	0.357
18	0.731	-0.449	-0.278	-0.64

Standard thresholds

P-value	Threshold
0.001	4.38241
0.0005	5.28206
0.0001	7.13621