MotifZN343.H12INVITRO.0.PSM.A
Gene (human)ZNF343
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
A
Motif length15
ConsensusnnvYGCTTCAYbnbv
GC content58.28%
Information content (bits; total / per base)13.458 / 0.897
Data sourcesChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words9996

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.882 0.884 0.778 0.78 0.825 0.829 2.574 2.603 181.985 200.102

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.993 0.988 0.983 0.975 0.932 0.922
best 0.994 0.99 0.986 0.979 0.935 0.927
Methyl HT-SELEX, 1 experiments median 0.992 0.986 0.98 0.97 0.928 0.917
best 0.992 0.986 0.98 0.97 0.928 0.917
Non-Methyl HT-SELEX, 1 experiments median 0.994 0.99 0.986 0.979 0.935 0.927
best 0.994 0.99 0.986 0.979 0.935 0.927
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF343-like {2.3.3.61} (TFClass)
TFClass IDTFClass: 2.3.3.61.1
HGNCHGNC:16017
MGI
EntrezGene (human)GeneID:79175
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN343_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6P1L6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011690.53308.51871.53125.5
021816.03376.01556.03248.0
032356.04907.02182.0551.0
04664.07101.0321.01910.0
05476.064.09436.020.0
068.09981.05.02.0
0710.02.04.09980.0
087.02.07.09980.0
0910.09982.04.00.0
108571.01085.0260.080.0
11353.07693.0359.01591.0
121225.03758.02360.02653.0
133354.02195.02693.01754.0
141520.254845.251767.251863.25
152223.01855.04408.01510.0
PFM
ACGT
010.1690.3310.1870.313
020.1820.3380.1560.325
030.2360.4910.2180.055
040.0660.710.0320.191
050.0480.0060.9440.002
060.0010.9980.0010.0
070.0010.00.00.998
080.0010.00.0010.998
090.0010.9990.00.0
100.8570.1090.0260.008
110.0350.770.0360.159
120.1230.3760.2360.265
130.3360.220.2690.175
140.1520.4850.1770.186
150.2220.1860.4410.151
PWM
ACGT
01-0.390.28-0.2890.224
02-0.3190.301-0.4730.262
03-0.0590.674-0.136-1.509
04-1.3231.044-2.046-0.269
05-1.654-3.631.328-4.72
06-5.4921.384-5.836-6.365
07-5.315-6.365-5.9841.384
08-5.594-6.365-5.5941.384
09-5.3151.384-5.984-6.991
101.232-0.833-2.255-3.414
11-1.9521.124-1.935-0.451
12-0.7120.408-0.0570.06
130.294-0.130.075-0.354
14-0.4960.662-0.346-0.293
15-0.117-0.2980.567-0.503
Standard thresholds
P-value Threshold
0.001 2.65706
0.0005 4.20116
0.0001 7.12466