ZN343.H12INVITRO.0.PSM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN343.H12INVITRO.0.PSM.A
Gene (human)	ZNF343 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	15
Consensus	nnvYGCTTCAYbnbv
GC content	58.28%
Information content (bits; total / per base)	13.458 / 0.897
Data sources	ChIP-Seq + HT-SELEX + Methyl-HT-SELEX
Aligned words	9996

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.882	0.884	0.778	0.78	0.825	0.829	2.574	2.603	181.985	200.102

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.993	0.988	0.983	0.975	0.932	0.922
Overall, 2 experiments	best	0.994	0.99	0.986	0.979	0.935	0.927
Methyl HT-SELEX, 1 experiments	median	0.992	0.986	0.98	0.97	0.928	0.917
Methyl HT-SELEX, 1 experiments	best	0.992	0.986	0.98	0.97	0.928	0.917
Non-Methyl HT-SELEX, 1 experiments	median	0.994	0.99	0.986	0.979	0.935	0.927
Non-Methyl HT-SELEX, 1 experiments	best	0.994	0.99	0.986	0.979	0.935	0.927

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF343-like {2.3.3.61} (TFClass)
TFClass ID	TFClass: 2.3.3.61.1
HGNC	HGNC:16017
MGI
EntrezGene (human)	GeneID:79175 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN343_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6P1L6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN343.H12INVITRO.0.PSM.A.pcm
PWM	ZN343.H12INVITRO.0.PSM.A.pwm
PFM	ZN343.H12INVITRO.0.PSM.A.pfm
Alignment	ZN343.H12INVITRO.0.PSM.A.words.tsv
Threshold to P-value map	ZN343.H12INVITRO.0.PSM.A.thr
Motif in other formats
JASPAR format	ZN343.H12INVITRO.0.PSM.A_jaspar_format.txt
MEME format	ZN343.H12INVITRO.0.PSM.A_meme_format.meme
Transfac format	ZN343.H12INVITRO.0.PSM.A_transfac_format.txt
Homer format	ZN343.H12INVITRO.0.PSM.A_homer_format_0.001.txt ZN343.H12INVITRO.0.PSM.A_homer_format_0.0005.txt ZN343.H12INVITRO.0.PSM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	1690.5	3308.5	1871.5	3125.5
02	1816.0	3376.0	1556.0	3248.0
03	2356.0	4907.0	2182.0	551.0
04	664.0	7101.0	321.0	1910.0
05	476.0	64.0	9436.0	20.0
06	8.0	9981.0	5.0	2.0
07	10.0	2.0	4.0	9980.0
08	7.0	2.0	7.0	9980.0
09	10.0	9982.0	4.0	0.0
10	8571.0	1085.0	260.0	80.0
11	353.0	7693.0	359.0	1591.0
12	1225.0	3758.0	2360.0	2653.0
13	3354.0	2195.0	2693.0	1754.0
14	1520.25	4845.25	1767.25	1863.25
15	2223.0	1855.0	4408.0	1510.0

PFM

	A	C	G	T
01	0.169	0.331	0.187	0.313
02	0.182	0.338	0.156	0.325
03	0.236	0.491	0.218	0.055
04	0.066	0.71	0.032	0.191
05	0.048	0.006	0.944	0.002
06	0.001	0.998	0.001	0.0
07	0.001	0.0	0.0	0.998
08	0.001	0.0	0.001	0.998
09	0.001	0.999	0.0	0.0
10	0.857	0.109	0.026	0.008
11	0.035	0.77	0.036	0.159
12	0.123	0.376	0.236	0.265
13	0.336	0.22	0.269	0.175
14	0.152	0.485	0.177	0.186
15	0.222	0.186	0.441	0.151

PWM

	A	C	G	T
01	-0.39	0.28	-0.289	0.224
02	-0.319	0.301	-0.473	0.262
03	-0.059	0.674	-0.136	-1.509
04	-1.323	1.044	-2.046	-0.269
05	-1.654	-3.63	1.328	-4.72
06	-5.492	1.384	-5.836	-6.365
07	-5.315	-6.365	-5.984	1.384
08	-5.594	-6.365	-5.594	1.384
09	-5.315	1.384	-5.984	-6.991
10	1.232	-0.833	-2.255	-3.414
11	-1.952	1.124	-1.935	-0.451
12	-0.712	0.408	-0.057	0.06
13	0.294	-0.13	0.075	-0.354
14	-0.496	0.662	-0.346	-0.293
15	-0.117	-0.298	0.567	-0.503

Standard thresholds

P-value	Threshold
0.001	2.65706
0.0005	4.20116
0.0001	7.12466