ZN341.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN341.H12INVIVO.0.P.B
Gene (human)	ZNF341 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	nRGAASAGChd
GC content	59.06%
Information content (bits; total / per base)	10.874 / 0.989
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (38)	0.824	0.858	0.723	0.775	0.796	0.825	2.587	2.791	117.043	209.469

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.015	2.361	0.132	0.055

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.35
HGNC	HGNC:15992
MGI
EntrezGene (human)	GeneID:84905 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN341_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BYN7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN341.H12INVIVO.0.P.B.pcm
PWM	ZN341.H12INVIVO.0.P.B.pwm
PFM	ZN341.H12INVIVO.0.P.B.pfm
Alignment	ZN341.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	ZN341.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	ZN341.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	ZN341.H12INVIVO.0.P.B_meme_format.meme
Transfac format	ZN341.H12INVIVO.0.P.B_transfac_format.txt
Homer format	ZN341.H12INVIVO.0.P.B_homer_format_0.001.txt ZN341.H12INVIVO.0.P.B_homer_format_0.0005.txt ZN341.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	194.0	156.0	337.0	313.0
02	220.0	16.0	725.0	39.0
03	44.0	42.0	876.0	38.0
04	867.0	78.0	53.0	2.0
05	921.0	13.0	62.0	4.0
06	27.0	511.0	421.0	41.0
07	903.0	5.0	64.0	28.0
08	6.0	5.0	981.0	8.0
09	34.0	930.0	28.0	8.0
10	215.0	518.0	106.0	161.0
11	242.0	161.0	409.0	188.0

PFM

	A	C	G	T
01	0.194	0.156	0.337	0.313
02	0.22	0.016	0.725	0.039
03	0.044	0.042	0.876	0.038
04	0.867	0.078	0.053	0.002
05	0.921	0.013	0.062	0.004
06	0.027	0.511	0.421	0.041
07	0.903	0.005	0.064	0.028
08	0.006	0.005	0.981	0.008
09	0.034	0.93	0.028	0.008
10	0.215	0.518	0.106	0.161
11	0.242	0.161	0.409	0.188

PWM

	A	C	G	T
01	-0.252	-0.467	0.297	0.223
02	-0.127	-2.653	1.06	-1.821
03	-1.706	-1.75	1.249	-1.846
04	1.239	-1.15	-1.526	-4.213
05	1.299	-2.839	-1.374	-3.783
06	-2.171	0.711	0.518	-1.774
07	1.279	-3.622	-1.343	-2.136
08	-3.484	-3.622	1.362	-3.253
09	-1.952	1.309	-2.136	-3.253
10	-0.15	0.725	-0.849	-0.436
11	-0.032	-0.436	0.49	-0.283

Standard thresholds

P-value	Threshold
0.001	4.47126
0.0005	5.45919
0.0001	7.22711