ZN341.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN341.H12INVITRO.1.P.D
Gene (human)	ZNF341 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	21
Consensus	vvRvvvvSndvndGGAASAGC
GC content	63.88%
Information content (bits; total / per base)	12.878 / 0.613
Data sources	ChIP-Seq
Aligned words	1001

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (38)	0.803	0.837	0.683	0.725	0.846	0.866	3.163	3.476	124.377	220.469

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	3.85	6.463	0.123	0.048

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.35
HGNC	HGNC:15992
MGI
EntrezGene (human)	GeneID:84905 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN341_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BYN7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN341.H12INVITRO.1.P.D.pcm
PWM	ZN341.H12INVITRO.1.P.D.pwm
PFM	ZN341.H12INVITRO.1.P.D.pfm
Alignment	ZN341.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN341.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN341.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN341.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN341.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN341.H12INVITRO.1.P.D_homer_format_0.001.txt ZN341.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN341.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	209.0	119.0	571.0	102.0
02	252.0	160.0	483.0	106.0
03	162.0	115.0	635.0	89.0
04	183.0	180.0	555.0	83.0
05	225.0	285.0	421.0	70.0
06	279.0	304.0	331.0	87.0
07	277.0	138.0	493.0	93.0
08	107.0	222.0	590.0	82.0
09	283.0	190.0	248.0	280.0
10	241.0	86.0	486.0	188.0
11	185.0	242.0	514.0	60.0
12	303.0	295.0	256.0	147.0
13	189.0	166.0	401.0	245.0
14	203.0	6.0	756.0	36.0
15	47.0	66.0	850.0	38.0
16	826.0	69.0	104.0	2.0
17	883.0	6.0	99.0	13.0
18	20.0	489.0	459.0	33.0
19	832.0	12.0	106.0	51.0
20	4.0	9.0	982.0	6.0
21	52.0	890.0	39.0	20.0

PFM

	A	C	G	T
01	0.209	0.119	0.57	0.102
02	0.252	0.16	0.483	0.106
03	0.162	0.115	0.634	0.089
04	0.183	0.18	0.554	0.083
05	0.225	0.285	0.421	0.07
06	0.279	0.304	0.331	0.087
07	0.277	0.138	0.493	0.093
08	0.107	0.222	0.589	0.082
09	0.283	0.19	0.248	0.28
10	0.241	0.086	0.486	0.188
11	0.185	0.242	0.513	0.06
12	0.303	0.295	0.256	0.147
13	0.189	0.166	0.401	0.245
14	0.203	0.006	0.755	0.036
15	0.047	0.066	0.849	0.038
16	0.825	0.069	0.104	0.002
17	0.882	0.006	0.099	0.013
18	0.02	0.489	0.459	0.033
19	0.831	0.012	0.106	0.051
20	0.004	0.009	0.981	0.006
21	0.052	0.889	0.039	0.02

PWM

	A	C	G	T
01	-0.179	-0.736	0.821	-0.888
02	0.007	-0.443	0.654	-0.85
03	-0.431	-0.769	0.927	-1.021
04	-0.31	-0.327	0.793	-1.09
05	-0.106	0.129	0.517	-1.256
06	0.108	0.193	0.278	-1.044
07	0.101	-0.59	0.675	-0.978
08	-0.84	-0.119	0.854	-1.102
09	0.122	-0.273	-0.009	0.112
10	-0.037	-1.055	0.66	-0.284
11	-0.3	-0.033	0.716	-1.407
12	0.19	0.163	0.023	-0.527
13	-0.278	-0.407	0.469	-0.021
14	-0.208	-3.485	1.101	-1.899
15	-1.643	-1.314	1.218	-1.847
16	1.189	-1.271	-0.868	-4.214
17	1.256	-3.485	-0.917	-2.84
18	-2.451	0.667	0.603	-1.982
19	1.197	-2.91	-0.85	-1.564
20	-3.784	-3.157	1.362	-3.485
21	-1.545	1.264	-1.822	-2.451

Standard thresholds

P-value	Threshold
0.001	3.99481
0.0005	4.96806
0.0001	6.99461