ZN341.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN341.H12INVITRO.0.P.D
Gene (human)	ZNF341 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	10
Consensus	nRGAASAGCh
GC content	60.21%
Information content (bits; total / per base)	11.042 / 1.104
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	6 (38)	0.822	0.858	0.718	0.775	0.787	0.819	2.505	2.744	119.377	220.252

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.707	4.106	0.134	0.059

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.35
HGNC	HGNC:15992
MGI
EntrezGene (human)	GeneID:84905 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN341_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BYN7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	6 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN341.H12INVITRO.0.P.D.pcm
PWM	ZN341.H12INVITRO.0.P.D.pwm
PFM	ZN341.H12INVITRO.0.P.D.pfm
Alignment	ZN341.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN341.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN341.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN341.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN341.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN341.H12INVITRO.0.P.D_homer_format_0.001.txt ZN341.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN341.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	208.0	165.0	341.0	286.0
02	208.0	8.0	749.0	35.0
03	41.0	56.0	862.0	41.0
04	867.0	75.0	55.0	3.0
05	916.0	16.0	61.0	7.0
06	15.0	546.0	407.0	32.0
07	919.0	10.0	56.0	15.0
08	2.0	11.0	982.0	5.0
09	28.0	950.0	17.0	5.0
10	176.0	535.0	119.0	170.0

PFM

	A	C	G	T
01	0.208	0.165	0.341	0.286
02	0.208	0.008	0.749	0.035
03	0.041	0.056	0.862	0.041
04	0.867	0.075	0.055	0.003
05	0.916	0.016	0.061	0.007
06	0.015	0.546	0.407	0.032
07	0.919	0.01	0.056	0.015
08	0.002	0.011	0.982	0.005
09	0.028	0.95	0.017	0.005
10	0.176	0.535	0.119	0.17

PWM

	A	C	G	T
01	-0.183	-0.412	0.309	0.134
02	-0.183	-3.253	1.093	-1.925
03	-1.774	-1.473	1.233	-1.774
04	1.239	-1.188	-1.49	-3.975
05	1.294	-2.653	-1.39	-3.362
06	-2.711	0.777	0.485	-2.01
07	1.297	-3.066	-1.473	-2.711
08	-4.213	-2.985	1.363	-3.622
09	-2.136	1.33	-2.598	-3.622
10	-0.348	0.757	-0.735	-0.382

Standard thresholds

P-value	Threshold
0.001	4.439445
0.0005	5.406395
0.0001	7.225635