ZN33B.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN33B.H12INVIVO.0.P.C
Gene (human)	ZNF33B (GeneCards)
Gene synonyms (human)	KOX2, ZNF11B
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	30
Consensus	hvvRRRGdATTKARTdnAGGSRhWKddddd
GC content	39.66%
Information content (bits; total / per base)	22.129 / 0.738
Data sources	ChIP-Seq
Aligned words	109

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.89	0.942	0.886	0.938	0.896	0.936	9.602	10.912	46.412	58.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF25-like {2.3.3.69} (TFClass)
TFClass ID	TFClass: 2.3.3.69.7
HGNC	HGNC:13097
MGI
EntrezGene (human)	GeneID:7582 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN33B_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q06732 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN33B.H12INVIVO.0.P.C.pcm
PWM	ZN33B.H12INVIVO.0.P.C.pwm
PFM	ZN33B.H12INVIVO.0.P.C.pfm
Alignment	ZN33B.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN33B.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN33B.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN33B.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN33B.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN33B.H12INVIVO.0.P.C_homer_format_0.001.txt ZN33B.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN33B.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	37.0	46.0	8.0	18.0
02	47.0	17.0	30.0	15.0
03	27.0	12.0	61.0	9.0
04	66.0	6.0	22.0	15.0
05	66.0	4.0	35.0	4.0
06	34.0	0.0	73.0	2.0
07	6.0	3.0	93.0	7.0
08	60.0	6.0	24.0	19.0
09	96.0	8.0	1.0	4.0
10	2.0	1.0	0.0	106.0
11	0.0	7.0	7.0	95.0
12	2.0	16.0	38.0	53.0
13	94.0	2.0	4.0	9.0
14	83.0	3.0	12.0	11.0
15	3.0	8.0	10.0	88.0
16	59.0	10.0	21.0	19.0
17	5.0	42.0	31.0	31.0
18	100.0	1.0	3.0	5.0
19	10.0	0.0	97.0	2.0
20	2.0	2.0	103.0	2.0
21	10.0	12.0	83.0	4.0
22	63.0	6.0	32.0	8.0
23	56.0	23.0	10.0	20.0
24	12.0	6.0	5.0	86.0
25	5.0	10.0	12.0	82.0
26	21.0	10.0	51.0	27.0
27	36.0	4.0	53.0	16.0
28	25.0	8.0	31.0	45.0
29	22.0	13.0	19.0	55.0
30	41.0	9.0	33.0	26.0

PFM

	A	C	G	T
01	0.339	0.422	0.073	0.165
02	0.431	0.156	0.275	0.138
03	0.248	0.11	0.56	0.083
04	0.606	0.055	0.202	0.138
05	0.606	0.037	0.321	0.037
06	0.312	0.0	0.67	0.018
07	0.055	0.028	0.853	0.064
08	0.55	0.055	0.22	0.174
09	0.881	0.073	0.009	0.037
10	0.018	0.009	0.0	0.972
11	0.0	0.064	0.064	0.872
12	0.018	0.147	0.349	0.486
13	0.862	0.018	0.037	0.083
14	0.761	0.028	0.11	0.101
15	0.028	0.073	0.092	0.807
16	0.541	0.092	0.193	0.174
17	0.046	0.385	0.284	0.284
18	0.917	0.009	0.028	0.046
19	0.092	0.0	0.89	0.018
20	0.018	0.018	0.945	0.018
21	0.092	0.11	0.761	0.037
22	0.578	0.055	0.294	0.073
23	0.514	0.211	0.092	0.183
24	0.11	0.055	0.046	0.789
25	0.046	0.092	0.11	0.752
26	0.193	0.092	0.468	0.248
27	0.33	0.037	0.486	0.147
28	0.229	0.073	0.284	0.413
29	0.202	0.119	0.174	0.505
30	0.376	0.083	0.303	0.239

PWM

	A	C	G	T
01	0.295	0.507	-1.131	-0.394
02	0.528	-0.447	0.092	-0.564
03	-0.009	-0.769	0.783	-1.027
04	0.86	-1.377	-0.204	-0.564
05	0.86	-1.704	0.241	-1.704
06	0.213	-3.188	0.959	-2.193
07	-1.377	-1.919	1.198	-1.246
08	0.767	-1.377	-0.121	-0.343
09	1.229	-1.131	-2.571	-1.704
10	-2.193	-2.571	-3.188	1.327
11	-3.188	-1.246	-1.246	1.219
12	-2.193	-0.504	0.321	0.645
13	1.209	-2.193	-1.704	-1.027
14	1.086	-1.919	-0.769	-0.848
15	-1.919	-1.131	-0.934	1.143
16	0.75	-0.934	-0.248	-0.343
17	-1.527	0.418	0.124	0.124
18	1.27	-2.571	-1.919	-1.527
19	-0.934	-3.188	1.24	-2.193
20	-2.193	-2.193	1.299	-2.193
21	-0.934	-0.769	1.086	-1.704
22	0.814	-1.377	0.155	-1.131
23	0.699	-0.162	-0.934	-0.294
24	-0.769	-1.377	-1.527	1.121
25	-1.527	-0.934	-0.769	1.074
26	-0.248	-0.934	0.607	-0.009
27	0.268	-1.704	0.645	-0.504
28	-0.082	-1.131	0.124	0.485
29	-0.204	-0.696	-0.343	0.681
30	0.395	-1.027	0.184	-0.045

Standard thresholds

P-value	Threshold
0.001	1.46756
0.0005	2.68021
0.0001	5.27486