ZN337.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN337.H12INVIVO.0.P.C
Gene (human)	ZNF337 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	RRRYYYdYYhYhhYYRGRCYdKY
GC content	50.95%
Information content (bits; total / per base)	14.118 / 0.614
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.839	0.848	0.808	0.818	0.804	0.817	7.727	7.928	259.526	300.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.225
HGNC	HGNC:15809
MGI
EntrezGene (human)	GeneID:26152 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN337_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9Y3M9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN337.H12INVIVO.0.P.C.pcm
PWM	ZN337.H12INVIVO.0.P.C.pwm
PFM	ZN337.H12INVIVO.0.P.C.pfm
Alignment	ZN337.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN337.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN337.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN337.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN337.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN337.H12INVIVO.0.P.C_homer_format_0.001.txt ZN337.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN337.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	113.0	92.0	709.0	81.0
02	591.0	123.0	215.0	66.0
03	585.0	136.0	199.0	75.0
04	89.0	149.0	93.0	664.0
05	23.0	117.0	91.0	764.0
06	53.0	322.0	60.0	560.0
07	387.0	79.0	424.0	105.0
08	25.0	111.0	93.0	766.0
09	24.0	621.0	79.0	271.0
10	567.0	161.0	118.0	149.0
11	59.0	591.0	112.0	233.0
12	106.0	512.0	78.0	299.0
13	515.0	197.0	105.0	178.0
14	89.0	677.0	88.0	141.0
15	35.0	150.0	104.0	706.0
16	502.0	36.0	341.0	116.0
17	51.0	49.0	864.0	31.0
18	679.0	46.0	212.0	58.0
19	49.0	840.0	62.0	44.0
20	95.0	754.0	27.0	119.0
21	456.0	66.0	185.0	288.0
22	78.0	65.0	744.0	108.0
23	62.0	644.0	118.0	171.0

PFM

	A	C	G	T
01	0.114	0.092	0.713	0.081
02	0.594	0.124	0.216	0.066
03	0.588	0.137	0.2	0.075
04	0.089	0.15	0.093	0.667
05	0.023	0.118	0.091	0.768
06	0.053	0.324	0.06	0.563
07	0.389	0.079	0.426	0.106
08	0.025	0.112	0.093	0.77
09	0.024	0.624	0.079	0.272
10	0.57	0.162	0.119	0.15
11	0.059	0.594	0.113	0.234
12	0.107	0.515	0.078	0.301
13	0.518	0.198	0.106	0.179
14	0.089	0.68	0.088	0.142
15	0.035	0.151	0.105	0.71
16	0.505	0.036	0.343	0.117
17	0.051	0.049	0.868	0.031
18	0.682	0.046	0.213	0.058
19	0.049	0.844	0.062	0.044
20	0.095	0.758	0.027	0.12
21	0.458	0.066	0.186	0.289
22	0.078	0.065	0.748	0.109
23	0.062	0.647	0.119	0.172

PWM

	A	C	G	T
01	-0.781	-0.983	1.043	-1.108
02	0.861	-0.697	-0.145	-1.308
03	0.851	-0.598	-0.221	-1.183
04	-1.016	-0.508	-0.972	0.978
05	-2.316	-0.747	-0.994	1.117
06	-1.521	0.257	-1.401	0.808
07	0.44	-1.132	0.53	-0.853
08	-2.238	-0.798	-0.972	1.12
09	-2.276	0.911	-1.132	0.085
10	0.82	-0.431	-0.738	-0.508
11	-1.417	0.861	-0.79	-0.065
12	-0.844	0.718	-1.145	0.183
13	0.724	-0.231	-0.853	-0.332
14	-1.016	0.997	-1.027	-0.562
15	-1.92	-0.501	-0.863	1.039
16	0.699	-1.893	0.314	-0.755
17	-1.558	-1.597	1.24	-2.035
18	1.0	-1.658	-0.159	-1.434
19	-1.597	1.212	-1.369	-1.701
20	-0.951	1.104	-2.166	-0.73
21	0.603	-1.308	-0.294	0.146
22	-1.145	-1.323	1.091	-0.825
23	-1.369	0.947	-0.738	-0.372

Standard thresholds

P-value	Threshold
0.001	3.79031
0.0005	4.72596
0.0001	6.72771