| Motif | ZN335.H12RSNP.1.P.D |
| Gene (human) | ZNF335 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf335 |
| Gene synonyms (mouse) | Zfp335 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ZN335.H12RSNP.1.P.D |
| Gene (human) | ZNF335 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | Znf335 |
| Gene synonyms (mouse) | Zfp335 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 7 |
| Consensus | YGCCTGW |
| GC content | 60.39% |
| Information content (bits; total / per base) | 9.514 / 1.359 |
| Data sources | ChIP-Seq |
| Aligned words | 123 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (13) | 0.711 | 0.844 | 0.567 | 0.754 | 0.717 | 0.814 | 1.722 | 2.112 | 9.854 | 15.398 |
| Mouse | 5 (33) | 0.775 | 0.904 | 0.658 | 0.811 | 0.746 | 0.875 | 1.917 | 2.293 | 4.721 | 23.367 |
| rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
|---|---|---|---|---|
| # | 2.054 | 1.802 | 0.071 | 0.065 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | Multiple dispersed zinc fingers {2.3.4} (TFClass) |
| TF subfamily | Unclassified {2.3.4.0} (TFClass) |
| TFClass ID | TFClass: 2.3.4.0.2 |
| HGNC | HGNC:15807 |
| MGI | MGI:2682313 |
| EntrezGene (human) | GeneID:63925 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:329559 (SSTAR profile) |
| UniProt ID (human) | ZN335_HUMAN |
| UniProt ID (mouse) | ZN335_MOUSE |
| UniProt AC (human) | Q9H4Z2 (TFClass) |
| UniProt AC (mouse) | A2A5K6 (TFClass) |
| GRECO-DB-TF | no |
| ChIP-Seq | 2 human, 5 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN335.H12RSNP.1.P.D.pcm |
| PWM | ZN335.H12RSNP.1.P.D.pwm |
| PFM | ZN335.H12RSNP.1.P.D.pfm |
| Alignment | ZN335.H12RSNP.1.P.D.words.tsv |
| Threshold to P-value map | ZN335.H12RSNP.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZN335.H12RSNP.1.P.D_jaspar_format.txt |
| MEME format | ZN335.H12RSNP.1.P.D_meme_format.meme |
| Transfac format | ZN335.H12RSNP.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.0 | 45.0 | 0.0 | 68.0 |
| 02 | 4.0 | 0.0 | 110.0 | 9.0 |
| 03 | 1.0 | 122.0 | 0.0 | 0.0 |
| 04 | 1.0 | 120.0 | 0.0 | 2.0 |
| 05 | 1.0 | 0.0 | 0.0 | 122.0 |
| 06 | 9.0 | 1.0 | 105.0 | 8.0 |
| 07 | 61.0 | 15.0 | 2.0 | 45.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.081 | 0.366 | 0.0 | 0.553 |
| 02 | 0.033 | 0.0 | 0.894 | 0.073 |
| 03 | 0.008 | 0.992 | 0.0 | 0.0 |
| 04 | 0.008 | 0.976 | 0.0 | 0.016 |
| 05 | 0.008 | 0.0 | 0.0 | 0.992 |
| 06 | 0.073 | 0.008 | 0.854 | 0.065 |
| 07 | 0.496 | 0.122 | 0.016 | 0.366 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.048 | 0.369 | -3.279 | 0.773 |
| 02 | -1.815 | -3.279 | 1.247 | -1.142 |
| 03 | -2.674 | 1.35 | -3.279 | -3.279 |
| 04 | -2.674 | 1.333 | -3.279 | -2.3 |
| 05 | -2.674 | -3.279 | -3.279 | 1.35 |
| 06 | -1.142 | -2.674 | 1.201 | -1.245 |
| 07 | 0.666 | -0.679 | -2.3 | 0.369 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.020235 |
| 0.0005 | 5.56752 |
| 0.0001 | 7.5891 |