MotifZN335.H12INVITRO.1.P.D
Gene (human)ZNF335
(GeneCards)
Gene synonyms (human)
Gene (mouse)Znf335
Gene synonyms (mouse)Zfp335
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
D
Motif length7
ConsensusYGCCTGW
GC content60.39%
Information content (bits; total / per base)9.514 / 1.359
Data sourcesChIP-Seq
Aligned words123

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (13) 0.711 0.844 0.567 0.754 0.717 0.814 1.722 2.112 9.854 15.398
Mouse 5 (33) 0.775 0.904 0.658 0.811 0.746 0.875 1.917 2.293 4.721 23.367

rSNP benchmarking, ADASTRA odds-ratio -log-Fisher's P Pearson r Kendall tau
# 2.054 1.802 0.071 0.065
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMultiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamilyUnclassified {2.3.4.0} (TFClass)
TFClass IDTFClass: 2.3.4.0.2
HGNCHGNC:15807
MGIMGI:2682313
EntrezGene (human)GeneID:63925
(SSTAR profile)
EntrezGene (mouse)GeneID:329559
(SSTAR profile)
UniProt ID (human)ZN335_HUMAN
UniProt ID (mouse)ZN335_MOUSE
UniProt AC (human)Q9H4Z2
(TFClass)
UniProt AC (mouse)A2A5K6
(TFClass)
GRECO-DB-TF
no
ChIP-Seq 2 human, 5 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0110.045.00.068.0
024.00.0110.09.0
031.0122.00.00.0
041.0120.00.02.0
051.00.00.0122.0
069.01.0105.08.0
0761.015.02.045.0
PFM
ACGT
010.0810.3660.00.553
020.0330.00.8940.073
030.0080.9920.00.0
040.0080.9760.00.016
050.0080.00.00.992
060.0730.0080.8540.065
070.4960.1220.0160.366
PWM
ACGT
01-1.0480.369-3.2790.773
02-1.815-3.2791.247-1.142
03-2.6741.35-3.279-3.279
04-2.6741.333-3.279-2.3
05-2.674-3.279-3.2791.35
06-1.142-2.6741.201-1.245
070.666-0.679-2.30.369
Standard thresholds
P-value Threshold
0.001 5.020235
0.0005 5.56752
0.0001 7.5891