ZN335.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN335.H12INVITRO.0.P.D
Gene (human)	ZNF335 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf335
Gene synonyms (mouse)	Zfp335
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	bRGnYGbCYnnnvMdnYGCCTGM
GC content	62.21%
Information content (bits; total / per base)	17.401 / 0.757
Data sources	ChIP-Seq
Aligned words	104

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (13)	0.771	0.886	0.668	0.854	0.808	0.912	4.284	6.597	12.699	20.201
Mouse	5 (33)	0.796	0.938	0.78	0.916	0.785	0.95	5.961	7.918	11.051	27.638

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	1.889	1.455	0.101	0.073

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.2
HGNC	HGNC:15807
MGI	MGI:2682313
EntrezGene (human)	GeneID:63925 (SSTAR profile)
EntrezGene (mouse)	GeneID:329559 (SSTAR profile)
UniProt ID (human)	ZN335_HUMAN
UniProt ID (mouse)	ZN335_MOUSE
UniProt AC (human)	Q9H4Z2 (TFClass)
UniProt AC (mouse)	A2A5K6 (TFClass)
GRECO-DB-TF	no

ChIP-Seq	2 human, 5 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN335.H12INVITRO.0.P.D.pcm
PWM	ZN335.H12INVITRO.0.P.D.pwm
PFM	ZN335.H12INVITRO.0.P.D.pfm
Alignment	ZN335.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN335.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN335.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN335.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN335.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN335.H12INVITRO.0.P.D_homer_format_0.001.txt ZN335.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN335.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	9.0	16.0	51.0	28.0
02	31.0	3.0	58.0	12.0
03	6.0	6.0	86.0	6.0
04	14.0	49.0	27.0	14.0
05	6.0	21.0	8.0	69.0
06	7.0	2.0	82.0	13.0
07	7.0	29.0	16.0	52.0
08	0.0	95.0	1.0	8.0
09	1.0	71.0	2.0	30.0
10	26.0	18.0	36.0	24.0
11	22.0	43.0	22.0	17.0
12	26.0	23.0	39.0	16.0
13	14.0	19.0	60.0	11.0
14	37.0	52.0	4.0	11.0
15	26.0	6.0	38.0	34.0
16	27.0	27.0	31.0	19.0
17	5.0	23.0	1.0	75.0
18	0.0	0.0	100.0	4.0
19	1.0	103.0	0.0	0.0
20	2.0	101.0	0.0	1.0
21	1.0	2.0	4.0	97.0
22	3.0	1.0	90.0	10.0
23	64.0	19.0	3.0	18.0

PFM

	A	C	G	T
01	0.087	0.154	0.49	0.269
02	0.298	0.029	0.558	0.115
03	0.058	0.058	0.827	0.058
04	0.135	0.471	0.26	0.135
05	0.058	0.202	0.077	0.663
06	0.067	0.019	0.788	0.125
07	0.067	0.279	0.154	0.5
08	0.0	0.913	0.01	0.077
09	0.01	0.683	0.019	0.288
10	0.25	0.173	0.346	0.231
11	0.212	0.413	0.212	0.163
12	0.25	0.221	0.375	0.154
13	0.135	0.183	0.577	0.106
14	0.356	0.5	0.038	0.106
15	0.25	0.058	0.365	0.327
16	0.26	0.26	0.298	0.183
17	0.048	0.221	0.01	0.721
18	0.0	0.0	0.962	0.038
19	0.01	0.99	0.0	0.0
20	0.019	0.971	0.0	0.01
21	0.01	0.019	0.038	0.933
22	0.029	0.01	0.865	0.096
23	0.615	0.183	0.029	0.173

PWM

	A	C	G	T
01	-0.983	-0.459	0.653	0.071
02	0.169	-1.876	0.778	-0.725
03	-1.333	-1.333	1.166	-1.333
04	-0.583	0.613	0.036	-0.583
05	-1.333	-0.203	-1.087	0.949
06	-1.202	-2.151	1.119	-0.651
07	-1.202	0.105	-0.459	0.672
08	-3.152	1.264	-2.531	-1.087
09	-2.531	0.977	-2.151	0.137
10	0.0	-0.349	0.313	-0.076
11	-0.159	0.486	-0.159	-0.403
12	0.0	-0.117	0.391	-0.459
13	-0.583	-0.298	0.812	-0.804
14	0.34	0.672	-1.661	-0.804
15	0.0	-1.333	0.366	0.258
16	0.036	0.036	0.169	-0.298
17	-1.484	-0.117	-2.531	1.031
18	-3.152	-3.152	1.315	-1.661
19	-2.531	1.344	-3.152	-3.152
20	-2.151	1.325	-3.152	-2.531
21	-2.531	-2.151	-1.661	1.285
22	-1.876	-2.531	1.211	-0.889
23	0.875	-0.298	-1.876	-0.349

Standard thresholds

P-value	Threshold
0.001	2.94991
0.0005	4.05771
0.0001	6.40056