ZN333.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN333.H12CORE.0.P.C
Gene (human)	ZNF333 (GeneCards)
Gene synonyms (human)	KIAA1806
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	11
Consensus	RTGGAdSMGRR
GC content	61.54%
Information content (bits; total / per base)	11.698 / 1.063
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.862	0.874	0.77	0.788	0.862	0.866	3.648	3.712	205.257	233.013

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF177-like {2.3.3.40} (TFClass)
TFClass ID	TFClass: 2.3.3.40.3
HGNC	HGNC:15624
MGI
EntrezGene (human)	GeneID:84449 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN333_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96JL9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN333.H12CORE.0.P.C.pcm
PWM	ZN333.H12CORE.0.P.C.pwm
PFM	ZN333.H12CORE.0.P.C.pfm
Alignment	ZN333.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN333.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN333.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN333.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN333.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN333.H12CORE.0.P.C_homer_format_0.001.txt ZN333.H12CORE.0.P.C_homer_format_0.0005.txt ZN333.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	288.0	177.0	527.0	8.0
02	30.0	13.0	49.0	908.0
03	3.0	1.0	994.0	2.0
04	7.0	4.0	988.0	1.0
05	965.0	25.0	7.0	3.0
06	149.0	97.0	597.0	157.0
07	22.0	590.0	253.0	135.0
08	380.0	487.0	91.0	42.0
09	67.0	63.0	829.0	41.0
10	767.0	32.0	159.0	42.0
11	173.0	59.0	727.0	41.0

PFM

	A	C	G	T
01	0.288	0.177	0.527	0.008
02	0.03	0.013	0.049	0.908
03	0.003	0.001	0.994	0.002
04	0.007	0.004	0.988	0.001
05	0.965	0.025	0.007	0.003
06	0.149	0.097	0.597	0.157
07	0.022	0.59	0.253	0.135
08	0.38	0.487	0.091	0.042
09	0.067	0.063	0.829	0.041
10	0.767	0.032	0.159	0.042
11	0.173	0.059	0.727	0.041

PWM

	A	C	G	T
01	0.141	-0.342	0.742	-3.253
02	-2.071	-2.839	-1.602	1.285
03	-3.975	-4.525	1.375	-4.213
04	-3.362	-3.783	1.369	-4.525
05	1.346	-2.243	-3.362	-3.975
06	-0.513	-0.936	0.866	-0.461
07	-2.362	0.855	0.012	-0.61
08	0.416	0.663	-0.999	-1.75
09	-1.298	-1.358	1.194	-1.774
10	1.116	-2.01	-0.449	-1.75
11	-0.365	-1.422	1.063	-1.774

Standard thresholds

P-value	Threshold
0.001	4.26245
0.0005	5.254725
0.0001	7.289585