ZN331.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN331.H12INVITRO.0.P.D
Gene (human)	ZNF331 (GeneCards)
Gene synonyms (human)	RITA, ZNF361, ZNF463
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GRMWGGGCTCAGCWRGRhRRYTY
GC content	62.63%
Information content (bits; total / per base)	24.292 / 1.056
Data sources	ChIP-Seq
Aligned words	975

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.968	0.988	0.964	0.985	0.959	0.985	12.23	13.04	670.432	821.699

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.142
HGNC	HGNC:15489
MGI
EntrezGene (human)	GeneID:55422 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN331_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NQX6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN331.H12INVITRO.0.P.D.pcm
PWM	ZN331.H12INVITRO.0.P.D.pwm
PFM	ZN331.H12INVITRO.0.P.D.pfm
Alignment	ZN331.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN331.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN331.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN331.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN331.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN331.H12INVITRO.0.P.D_homer_format_0.001.txt ZN331.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN331.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	87.0	13.0	832.0	43.0
02	275.0	62.0	595.0	43.0
03	138.0	679.0	30.0	128.0
04	318.0	16.0	60.0	581.0
05	77.0	10.0	859.0	29.0
06	58.0	3.0	829.0	85.0
07	18.0	2.0	948.0	7.0
08	25.0	860.0	6.0	84.0
09	5.0	21.0	3.0	946.0
10	12.0	897.0	13.0	53.0
11	775.0	11.0	40.0	149.0
12	17.0	1.0	950.0	7.0
13	20.0	884.0	15.0	56.0
14	263.0	68.0	32.0	612.0
15	162.0	19.0	750.0	44.0
16	91.0	23.0	805.0	56.0
17	139.0	62.0	690.0	84.0
18	139.0	242.0	94.0	500.0
19	127.0	50.0	703.0	95.0
20	125.0	68.0	739.0	43.0
21	34.0	138.0	103.0	700.0
22	12.0	92.0	41.0	830.0
23	38.0	622.0	64.0	251.0

PFM

	A	C	G	T
01	0.089	0.013	0.853	0.044
02	0.282	0.064	0.61	0.044
03	0.142	0.696	0.031	0.131
04	0.326	0.016	0.062	0.596
05	0.079	0.01	0.881	0.03
06	0.059	0.003	0.85	0.087
07	0.018	0.002	0.972	0.007
08	0.026	0.882	0.006	0.086
09	0.005	0.022	0.003	0.97
10	0.012	0.92	0.013	0.054
11	0.795	0.011	0.041	0.153
12	0.017	0.001	0.974	0.007
13	0.021	0.907	0.015	0.057
14	0.27	0.07	0.033	0.628
15	0.166	0.019	0.769	0.045
16	0.093	0.024	0.826	0.057
17	0.143	0.064	0.708	0.086
18	0.143	0.248	0.096	0.513
19	0.13	0.051	0.721	0.097
20	0.128	0.07	0.758	0.044
21	0.035	0.142	0.106	0.718
22	0.012	0.094	0.042	0.851
23	0.039	0.638	0.066	0.257

PWM

	A	C	G	T
01	-1.018	-2.814	1.223	-1.703
02	0.12	-1.349	0.888	-1.703
03	-0.564	1.02	-2.046	-0.638
04	0.264	-2.628	-1.381	0.865
05	-1.137	-3.042	1.255	-2.078
06	-1.414	-3.951	1.219	-1.04
07	-2.522	-4.189	1.353	-3.337
08	-2.218	1.256	-3.459	-1.052
09	-3.598	-2.38	-3.951	1.351
10	-2.884	1.298	-2.814	-1.501
11	1.152	-2.96	-1.772	-0.488
12	-2.574	-4.502	1.355	-3.337
13	-2.425	1.283	-2.687	-1.448
14	0.075	-1.259	-1.985	0.916
15	-0.405	-2.472	1.119	-1.681
16	-0.974	-2.296	1.19	-1.448
17	-0.556	-1.349	1.036	-1.052
18	-0.556	-0.007	-0.942	0.715
19	-0.646	-1.557	1.055	-0.931
20	-0.661	-1.259	1.104	-1.703
21	-1.927	-0.564	-0.852	1.05
22	-2.884	-0.963	-1.748	1.22
23	-1.821	0.933	-1.318	0.029

Standard thresholds

P-value	Threshold
0.001	-0.98359
0.0005	0.45946
0.0001	3.54196