ZN329.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN329.H12INVITRO.0.P.D
Gene (human)	ZNF329 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf329
Gene synonyms (mouse)	Zfp329
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	vMYKGAWYMARShdbdMMWRRR
GC content	52.9%
Information content (bits; total / per base)	14.669 / 0.667
Data sources	ChIP-Seq
Aligned words	822

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.875	0.886	0.869	0.888	0.875	0.89	10.118	10.645	363.495	415.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.148
HGNC	HGNC:14209
MGI	MGI:1921283
EntrezGene (human)	GeneID:79673 (SSTAR profile)
EntrezGene (mouse)	GeneID:67230 (SSTAR profile)
UniProt ID (human)	ZN329_HUMAN
UniProt ID (mouse)	ZN329_MOUSE
UniProt AC (human)	Q86UD4 (TFClass)
UniProt AC (mouse)	Q6GQR8 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN329.H12INVITRO.0.P.D.pcm
PWM	ZN329.H12INVITRO.0.P.D.pwm
PFM	ZN329.H12INVITRO.0.P.D.pfm
Alignment	ZN329.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN329.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN329.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN329.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN329.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN329.H12INVITRO.0.P.D_homer_format_0.001.txt ZN329.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN329.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	156.0	406.0	198.0	62.0
02	157.0	603.0	24.0	38.0
03	53.0	88.0	30.0	651.0
04	79.0	16.0	598.0	129.0
05	46.0	32.0	725.0	19.0
06	711.0	51.0	32.0	28.0
07	163.0	26.0	96.0	537.0
08	60.0	558.0	40.0	164.0
09	179.0	531.0	54.0	58.0
10	670.0	52.0	59.0	41.0
11	139.0	44.0	520.0	119.0
12	36.0	625.0	140.0	21.0
13	155.0	342.0	69.0	256.0
14	272.0	98.0	284.0	168.0
15	60.0	245.0	109.0	408.0
16	268.0	71.0	311.0	172.0
17	146.0	541.0	86.0	49.0
18	180.0	545.0	39.0	58.0
19	112.0	33.0	97.0	580.0
20	83.0	51.0	658.0	30.0
21	490.0	108.0	174.0	50.0
22	605.0	61.0	96.0	60.0

PFM

	A	C	G	T
01	0.19	0.494	0.241	0.075
02	0.191	0.734	0.029	0.046
03	0.064	0.107	0.036	0.792
04	0.096	0.019	0.727	0.157
05	0.056	0.039	0.882	0.023
06	0.865	0.062	0.039	0.034
07	0.198	0.032	0.117	0.653
08	0.073	0.679	0.049	0.2
09	0.218	0.646	0.066	0.071
10	0.815	0.063	0.072	0.05
11	0.169	0.054	0.633	0.145
12	0.044	0.76	0.17	0.026
13	0.189	0.416	0.084	0.311
14	0.331	0.119	0.345	0.204
15	0.073	0.298	0.133	0.496
16	0.326	0.086	0.378	0.209
17	0.178	0.658	0.105	0.06
18	0.219	0.663	0.047	0.071
19	0.136	0.04	0.118	0.706
20	0.101	0.062	0.8	0.036
21	0.596	0.131	0.212	0.061
22	0.736	0.074	0.117	0.073

PWM

	A	C	G	T
01	-0.273	0.677	-0.037	-1.18
02	-0.267	1.071	-2.088	-1.653
03	-1.332	-0.837	-1.878	1.148
04	-0.943	-2.461	1.063	-0.461
05	-1.469	-1.817	1.255	-2.305
06	1.235	-1.369	-1.817	-1.943
07	-0.23	-2.013	-0.752	0.956
08	-1.212	0.994	-1.604	-0.224
09	-0.137	0.944	-1.314	-1.245
10	1.176	-1.351	-1.228	-1.58
11	-0.387	-1.512	0.923	-0.54
12	-1.705	1.107	-0.38	-2.212
13	-0.279	0.506	-1.075	0.218
14	0.278	-0.732	0.321	-0.2
15	-1.212	0.175	-0.627	0.682
16	0.264	-1.048	0.412	-0.176
17	-0.339	0.963	-0.86	-1.408
18	-0.131	0.97	-1.628	-1.245
19	-0.6	-1.787	-0.742	1.032
20	-0.895	-1.369	1.158	-1.878
21	0.864	-0.636	-0.165	-1.389
22	1.074	-1.196	-0.752	-1.212

Standard thresholds

P-value	Threshold
0.001	3.62121
0.0005	4.58801
0.0001	6.65441