ZN322.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN322.H12INVIVO.0.P.C
Gene (human)	ZNF322 (GeneCards)
Gene synonyms (human)	ZNF322A, ZNF388, ZNF489
Gene (mouse)	Znf322
Gene synonyms (mouse)	Zfp322a, Znf322a
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	20
Consensus	SdKMCTRbYMCdSdGCMdKv
GC content	60.67%
Information content (bits; total / per base)	14.026 / 0.701
Data sources	ChIP-Seq
Aligned words	908

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.843	0.87	0.823	0.85	0.842	0.871	5.011	5.276	428.921	463.222

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF322-like {2.3.3.52} (TFClass)
TFClass ID	TFClass: 2.3.3.52.1
HGNC	HGNC:23640
MGI	MGI:2442566
EntrezGene (human)	GeneID:79692 (SSTAR profile)
EntrezGene (mouse)	GeneID:218100 (SSTAR profile)
UniProt ID (human)	ZN322_HUMAN
UniProt ID (mouse)	ZN322_MOUSE
UniProt AC (human)	Q6U7Q0 (TFClass)
UniProt AC (mouse)	Q8BZ89 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN322.H12INVIVO.0.P.C.pcm
PWM	ZN322.H12INVIVO.0.P.C.pwm
PFM	ZN322.H12INVIVO.0.P.C.pfm
Alignment	ZN322.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN322.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN322.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN322.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN322.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN322.H12INVIVO.0.P.C_homer_format_0.001.txt ZN322.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN322.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	91.0	116.0	643.0	58.0
02	435.0	80.0	155.0	238.0
03	62.0	54.0	648.0	144.0
04	150.0	575.0	34.0	149.0
05	24.0	850.0	5.0	29.0
06	65.0	78.0	28.0	737.0
07	237.0	50.0	581.0	40.0
08	76.0	351.0	404.0	77.0
09	68.0	119.0	86.0	635.0
10	660.0	165.0	37.0	46.0
11	9.0	873.0	14.0	12.0
12	347.0	66.0	186.0	309.0
13	15.0	358.0	497.0	38.0
14	405.0	88.0	97.0	318.0
15	38.0	27.0	787.0	56.0
16	50.0	743.0	46.0	69.0
17	123.0	640.0	51.0	94.0
18	98.0	94.0	181.0	535.0
19	83.0	132.0	553.0	140.0
20	242.0	159.0	366.0	141.0

PFM

	A	C	G	T
01	0.1	0.128	0.708	0.064
02	0.479	0.088	0.171	0.262
03	0.068	0.059	0.714	0.159
04	0.165	0.633	0.037	0.164
05	0.026	0.936	0.006	0.032
06	0.072	0.086	0.031	0.812
07	0.261	0.055	0.64	0.044
08	0.084	0.387	0.445	0.085
09	0.075	0.131	0.095	0.699
10	0.727	0.182	0.041	0.051
11	0.01	0.961	0.015	0.013
12	0.382	0.073	0.205	0.34
13	0.017	0.394	0.547	0.042
14	0.446	0.097	0.107	0.35
15	0.042	0.03	0.867	0.062
16	0.055	0.818	0.051	0.076
17	0.135	0.705	0.056	0.104
18	0.108	0.104	0.199	0.589
19	0.091	0.145	0.609	0.154
20	0.267	0.175	0.403	0.155

PWM

	A	C	G	T
01	-0.903	-0.664	1.036	-1.343
02	0.647	-1.029	-0.378	0.047
03	-1.278	-1.412	1.044	-0.451
04	-0.41	0.925	-1.857	-0.417
05	-2.186	1.315	-3.53	-2.008
06	-1.232	-1.054	-2.041	1.172
07	0.043	-1.487	0.935	-1.702
08	-1.08	0.433	0.573	-1.067
09	-1.188	-0.639	-0.958	1.024
10	1.062	-0.316	-1.777	-1.567
11	-3.062	1.341	-2.679	-2.815
12	0.422	-1.217	-0.198	0.306
13	-2.617	0.453	0.78	-1.751
14	0.576	-0.936	-0.84	0.335
15	-1.751	-2.075	1.238	-1.377
16	-1.487	1.181	-1.567	-1.174
17	-0.606	1.032	-1.468	-0.871
18	-0.83	-0.871	-0.225	0.853
19	-0.993	-0.537	0.886	-0.479
20	0.064	-0.353	0.475	-0.472

Standard thresholds

P-value	Threshold
0.001	3.72686
0.0005	4.70491
0.0001	6.77576