ZN320.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN320.H12RSNP.0.P.D
Gene (human)	ZNF320 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vdKKdGGdbMhRGGGGCMddYKh
GC content	66.76%
Information content (bits; total / per base)	18.644 / 0.811
Data sources	ChIP-Seq
Aligned words	953

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.949	0.97	0.935	0.948	0.934	0.969	7.098	7.364	615.921	691.745

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.136
HGNC	HGNC:13842
MGI
EntrezGene (human)	GeneID:162967 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN320_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A2RRD8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN320.H12RSNP.0.P.D.pcm
PWM	ZN320.H12RSNP.0.P.D.pwm
PFM	ZN320.H12RSNP.0.P.D.pfm
Alignment	ZN320.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN320.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN320.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN320.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN320.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN320.H12RSNP.0.P.D_homer_format_0.001.txt ZN320.H12RSNP.0.P.D_homer_format_0.0005.txt ZN320.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	454.0	117.0	291.0	91.0
02	421.0	67.0	279.0	186.0
03	55.0	53.0	758.0	87.0
04	41.0	39.0	419.0	454.0
05	94.0	37.0	728.0	94.0
06	15.0	8.0	910.0	20.0
07	13.0	16.0	914.0	10.0
08	349.0	32.0	322.0	250.0
09	110.0	571.0	115.0	157.0
10	96.0	739.0	46.0	72.0
11	455.0	311.0	50.0	137.0
12	236.0	23.0	602.0	92.0
13	64.0	6.0	753.0	130.0
14	21.0	0.0	925.0	7.0
15	29.0	1.0	923.0	0.0
16	37.0	14.0	883.0	19.0
17	242.0	698.0	9.0	4.0
18	247.0	584.0	33.0	89.0
19	436.0	48.0	150.0	319.0
20	341.0	61.0	418.0	133.0
21	74.0	221.0	88.0	570.0
22	79.0	69.0	724.0	81.0
23	222.0	449.0	129.0	153.0

PFM

	A	C	G	T
01	0.476	0.123	0.305	0.095
02	0.442	0.07	0.293	0.195
03	0.058	0.056	0.795	0.091
04	0.043	0.041	0.44	0.476
05	0.099	0.039	0.764	0.099
06	0.016	0.008	0.955	0.021
07	0.014	0.017	0.959	0.01
08	0.366	0.034	0.338	0.262
09	0.115	0.599	0.121	0.165
10	0.101	0.775	0.048	0.076
11	0.477	0.326	0.052	0.144
12	0.248	0.024	0.632	0.097
13	0.067	0.006	0.79	0.136
14	0.022	0.0	0.971	0.007
15	0.03	0.001	0.969	0.0
16	0.039	0.015	0.927	0.02
17	0.254	0.732	0.009	0.004
18	0.259	0.613	0.035	0.093
19	0.458	0.05	0.157	0.335
20	0.358	0.064	0.439	0.14
21	0.078	0.232	0.092	0.598
22	0.083	0.072	0.76	0.085
23	0.233	0.471	0.135	0.161

PWM

	A	C	G	T
01	0.641	-0.704	0.199	-0.951
02	0.566	-1.251	0.157	-0.246
03	-1.442	-1.478	1.152	-0.995
04	-1.726	-1.774	0.561	0.641
05	-0.919	-1.824	1.112	-0.919
06	-2.664	-3.207	1.335	-2.402
07	-2.792	-2.606	1.339	-3.02
08	0.379	-1.963	0.299	0.048
09	-0.765	0.87	-0.721	-0.413
10	-0.898	1.127	-1.615	-1.18
11	0.644	0.265	-1.535	-0.548
12	-0.009	-2.273	0.923	-0.94
13	-1.295	-3.437	1.146	-0.6
14	-2.357	-4.941	1.351	-3.315
15	-2.056	-4.482	1.349	-4.941
16	-1.824	-2.726	1.305	-2.45
17	0.016	1.07	-3.109	-3.737
18	0.036	0.892	-1.933	-0.973
19	0.601	-1.574	-0.458	0.29
20	0.356	-1.342	0.559	-0.577
21	-1.154	-0.075	-0.984	0.868
22	-1.09	-1.222	1.107	-1.065
23	-0.07	0.63	-0.607	-0.439

Standard thresholds

P-value	Threshold
0.001	1.65736
0.0005	2.92186
0.0001	5.59366