ZN320.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN320.H12INVIVO.1.P.B
Gene (human)	ZNF320 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	11
Consensus	hRGGGGCMWRY
GC content	65.69%
Information content (bits; total / per base)	10.442 / 0.949
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.843	0.86	0.736	0.759	0.733	0.744	2.188	2.225	345.215	384.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.136
HGNC	HGNC:13842
MGI
EntrezGene (human)	GeneID:162967 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN320_HUMAN
UniProt ID (mouse)
UniProt AC (human)	A2RRD8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN320.H12INVIVO.1.P.B.pcm
PWM	ZN320.H12INVIVO.1.P.B.pwm
PFM	ZN320.H12INVIVO.1.P.B.pfm
Alignment	ZN320.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ZN320.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZN320.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ZN320.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ZN320.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ZN320.H12INVIVO.1.P.B_homer_format_0.001.txt ZN320.H12INVIVO.1.P.B_homer_format_0.0005.txt ZN320.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	447.0	257.0	136.0	160.0
02	233.0	29.0	592.0	146.0
03	63.0	3.0	809.0	125.0
04	27.0	0.0	971.0	2.0
05	23.0	1.0	976.0	0.0
06	34.0	30.0	908.0	28.0
07	273.0	712.0	5.0	10.0
08	153.0	768.0	15.0	64.0
09	563.0	5.0	71.0	361.0
10	315.0	14.0	542.0	129.0
11	51.0	237.0	145.0	567.0

PFM

	A	C	G	T
01	0.447	0.257	0.136	0.16
02	0.233	0.029	0.592	0.146
03	0.063	0.003	0.809	0.125
04	0.027	0.0	0.971	0.002
05	0.023	0.001	0.976	0.0
06	0.034	0.03	0.908	0.028
07	0.273	0.712	0.005	0.01
08	0.153	0.768	0.015	0.064
09	0.563	0.005	0.071	0.361
10	0.315	0.014	0.542	0.129
11	0.051	0.237	0.145	0.567

PWM

	A	C	G	T
01	0.578	0.027	-0.603	-0.442
02	-0.07	-2.103	0.858	-0.533
03	-1.358	-3.975	1.17	-0.686
04	-2.171	-4.982	1.352	-4.213
05	-2.32	-4.525	1.357	-4.982
06	-1.952	-2.071	1.285	-2.136
07	0.087	1.042	-3.622	-3.066
08	-0.487	1.118	-2.711	-1.343
09	0.808	-3.622	-1.242	0.365
10	0.23	-2.773	0.77	-0.655
11	-1.563	-0.053	-0.54	0.815

Standard thresholds

P-value	Threshold
0.001	4.676195
0.0005	5.576215
0.0001	7.36006