MotifZN320.H12INVIVO.1.P.B
Gene (human)ZNF320
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length11
ConsensushRGGGGCMWRY
GC content65.69%
Information content (bits; total / per base)10.442 / 0.949
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 2 (9) 0.843 0.86 0.736 0.759 0.733 0.744 2.188 2.225 345.215 384.796
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.136
HGNCHGNC:13842
MGI
EntrezGene (human)GeneID:162967
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN320_HUMAN
UniProt ID (mouse)
UniProt AC (human)A2RRD8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 2 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01447.0257.0136.0160.0
02233.029.0592.0146.0
0363.03.0809.0125.0
0427.00.0971.02.0
0523.01.0976.00.0
0634.030.0908.028.0
07273.0712.05.010.0
08153.0768.015.064.0
09563.05.071.0361.0
10315.014.0542.0129.0
1151.0237.0145.0567.0
PFM
ACGT
010.4470.2570.1360.16
020.2330.0290.5920.146
030.0630.0030.8090.125
040.0270.00.9710.002
050.0230.0010.9760.0
060.0340.030.9080.028
070.2730.7120.0050.01
080.1530.7680.0150.064
090.5630.0050.0710.361
100.3150.0140.5420.129
110.0510.2370.1450.567
PWM
ACGT
010.5780.027-0.603-0.442
02-0.07-2.1030.858-0.533
03-1.358-3.9751.17-0.686
04-2.171-4.9821.352-4.213
05-2.32-4.5251.357-4.982
06-1.952-2.0711.285-2.136
070.0871.042-3.622-3.066
08-0.4871.118-2.711-1.343
090.808-3.622-1.2420.365
100.23-2.7730.77-0.655
11-1.563-0.053-0.540.815
Standard thresholds
P-value Threshold
0.001 4.676195
0.0005 5.576215
0.0001 7.36006