ZN317.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN317.H12INVITRO.1.P.D
Gene (human)	ZNF317 (GeneCards)
Gene synonyms (human)	KIAA1588
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	RTRvRRRhYARRRRRMARTGGRR
GC content	45.78%
Information content (bits; total / per base)	17.973 / 0.781
Data sources	ChIP-Seq
Aligned words	998

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.834	0.863	0.825	0.854	0.879	0.902	7.734	8.218	326.167	379.215

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.150
HGNC	HGNC:13507
MGI
EntrezGene (human)	GeneID:57693 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN317_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96PQ6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN317.H12INVITRO.1.P.D.pcm
PWM	ZN317.H12INVITRO.1.P.D.pwm
PFM	ZN317.H12INVITRO.1.P.D.pfm
Alignment	ZN317.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN317.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN317.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN317.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN317.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN317.H12INVITRO.1.P.D_homer_format_0.001.txt ZN317.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN317.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	772.0	76.0	88.0	62.0
02	94.0	51.0	42.0	811.0
03	107.0	30.0	788.0	73.0
04	180.0	224.0	521.0	73.0
05	761.0	68.0	109.0	60.0
06	572.0	27.0	306.0	93.0
07	157.0	45.0	708.0	88.0
08	114.0	579.0	100.0	205.0
09	129.0	630.0	91.0	148.0
10	815.0	37.0	99.0	47.0
11	180.0	47.0	731.0	40.0
12	730.0	78.0	161.0	29.0
13	768.0	20.0	137.0	73.0
14	185.0	19.0	760.0	34.0
15	611.0	60.0	293.0	34.0
16	196.0	659.0	59.0	84.0
17	830.0	35.0	91.0	42.0
18	477.0	26.0	381.0	114.0
19	60.0	30.0	92.0	816.0
20	117.0	11.0	827.0	43.0
21	140.0	33.0	799.0	26.0
22	615.0	86.0	244.0	53.0
23	685.0	49.0	161.0	103.0

PFM

	A	C	G	T
01	0.774	0.076	0.088	0.062
02	0.094	0.051	0.042	0.813
03	0.107	0.03	0.79	0.073
04	0.18	0.224	0.522	0.073
05	0.763	0.068	0.109	0.06
06	0.573	0.027	0.307	0.093
07	0.157	0.045	0.709	0.088
08	0.114	0.58	0.1	0.205
09	0.129	0.631	0.091	0.148
10	0.817	0.037	0.099	0.047
11	0.18	0.047	0.732	0.04
12	0.731	0.078	0.161	0.029
13	0.77	0.02	0.137	0.073
14	0.185	0.019	0.762	0.034
15	0.612	0.06	0.294	0.034
16	0.196	0.66	0.059	0.084
17	0.832	0.035	0.091	0.042
18	0.478	0.026	0.382	0.114
19	0.06	0.03	0.092	0.818
20	0.117	0.011	0.829	0.043
21	0.14	0.033	0.801	0.026
22	0.616	0.086	0.244	0.053
23	0.686	0.049	0.161	0.103

PWM

	A	C	G	T
01	1.125	-1.173	-1.03	-1.372
02	-0.965	-1.561	-1.748	1.174
03	-0.838	-2.069	1.145	-1.213
04	-0.324	-0.107	0.733	-1.213
05	1.111	-1.282	-0.819	-1.404
06	0.826	-2.169	0.203	-0.975
07	-0.459	-1.682	1.039	-1.03
08	-0.775	0.838	-0.904	-0.195
09	-0.653	0.922	-0.997	-0.518
10	1.179	-1.87	-0.914	-1.64
11	-0.324	-1.64	1.07	-1.795
12	1.069	-1.148	-0.434	-2.101
13	1.12	-2.448	-0.594	-1.213
14	-0.297	-2.495	1.109	-1.95
15	0.892	-1.404	0.16	-1.95
16	-0.239	0.967	-1.42	-1.075
17	1.197	-1.923	-0.997	-1.748
18	0.645	-2.204	0.421	-0.775
19	-1.404	-2.069	-0.986	1.18
20	-0.75	-2.983	1.194	-1.726
21	-0.572	-1.979	1.159	-2.204
22	0.898	-1.052	-0.022	-1.524
23	1.006	-1.6	-0.434	-0.875

Standard thresholds

P-value	Threshold
0.001	2.56696
0.0005	3.65671
0.0001	5.99181