ZN317.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN317.H12INVITRO.0.P.D
Gene (human)	ZNF317 (GeneCards)
Gene synonyms (human)	KIAA1588
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	RRhWRACWRMWGAYWWYYbR
GC content	42.58%
Information content (bits; total / per base)	16.596 / 0.83
Data sources	ChIP-Seq
Aligned words	455

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.901	0.924	0.889	0.909	0.883	0.906	7.298	7.784	549.824	611.237

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.150
HGNC	HGNC:13507
MGI
EntrezGene (human)	GeneID:57693 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN317_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96PQ6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN317.H12INVITRO.0.P.D.pcm
PWM	ZN317.H12INVITRO.0.P.D.pwm
PFM	ZN317.H12INVITRO.0.P.D.pfm
Alignment	ZN317.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN317.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN317.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN317.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN317.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN317.H12INVITRO.0.P.D_homer_format_0.001.txt ZN317.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN317.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	80.0	20.0	338.0	17.0
02	341.0	22.0	69.0	23.0
03	177.0	103.0	50.0	125.0
04	78.0	27.0	58.0	292.0
05	138.0	14.0	241.0	62.0
06	371.0	30.0	29.0	25.0
07	5.0	416.0	6.0	28.0
08	350.0	10.0	34.0	61.0
09	70.0	10.0	355.0	20.0
10	60.0	359.0	12.0	24.0
11	187.0	19.0	19.0	230.0
12	35.0	3.0	409.0	8.0
13	432.0	6.0	9.0	8.0
14	14.0	293.0	9.0	139.0
15	59.0	24.0	15.0	357.0
16	49.0	42.0	32.0	332.0
17	53.0	261.0	19.0	122.0
18	30.0	48.0	40.0	337.0
19	44.0	268.0	59.0	84.0
20	313.0	47.0	50.0	45.0

PFM

	A	C	G	T
01	0.176	0.044	0.743	0.037
02	0.749	0.048	0.152	0.051
03	0.389	0.226	0.11	0.275
04	0.171	0.059	0.127	0.642
05	0.303	0.031	0.53	0.136
06	0.815	0.066	0.064	0.055
07	0.011	0.914	0.013	0.062
08	0.769	0.022	0.075	0.134
09	0.154	0.022	0.78	0.044
10	0.132	0.789	0.026	0.053
11	0.411	0.042	0.042	0.505
12	0.077	0.007	0.899	0.018
13	0.949	0.013	0.02	0.018
14	0.031	0.644	0.02	0.305
15	0.13	0.053	0.033	0.785
16	0.108	0.092	0.07	0.73
17	0.116	0.574	0.042	0.268
18	0.066	0.105	0.088	0.741
19	0.097	0.589	0.13	0.185
20	0.688	0.103	0.11	0.099

PWM

	A	C	G	T
01	-0.346	-1.678	1.08	-1.828
02	1.089	-1.589	-0.491	-1.547
03	0.437	-0.098	-0.805	0.093
04	-0.371	-1.396	-0.661	0.935
05	0.191	-2.005	0.744	-0.596
06	1.173	-1.296	-1.329	-1.469
07	-2.871	1.287	-2.728	-1.362
08	1.115	-2.302	-1.177	-0.612
09	-0.477	-2.302	1.129	-1.678
10	-0.628	1.14	-2.142	-1.508
11	0.492	-1.725	-1.725	0.697
12	-1.149	-3.237	1.27	-2.493
13	1.325	-2.728	-2.393	-2.493
14	-2.005	0.938	-2.393	0.198
15	-0.644	-1.508	-1.942	1.135
16	-0.825	-0.974	-1.235	1.062
17	-0.749	0.823	-1.725	0.069
18	-1.296	-0.845	-1.021	1.077
19	-0.929	0.849	-0.644	-0.298
20	1.004	-0.865	-0.805	-0.907

Standard thresholds

P-value	Threshold
0.001	2.97221
0.0005	4.04321
0.0001	6.32321