ZN316.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN316.H12INVIVO.0.P.C
Gene (human)	ZNF316 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf316
Gene synonyms (mouse)	Zfp316
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	24
Consensus	YYTGSCCTCAdRRRGCTTvYWbTY
GC content	57.13%
Information content (bits; total / per base)	22.476 / 0.937
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.955	0.982	0.943	0.976	0.958	0.986	11.197	12.726	521.319	608.509

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.43
HGNC	HGNC:13843
MGI	MGI:1860402
EntrezGene (human)	GeneID:100131017 (SSTAR profile)
EntrezGene (mouse)	GeneID:54201 (SSTAR profile)
UniProt ID (human)	ZN316_HUMAN
UniProt ID (mouse)	ZF316_MOUSE
UniProt AC (human)	A6NFI3 (TFClass)
UniProt AC (mouse)	Q6PGE4 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN316.H12INVIVO.0.P.C.pcm
PWM	ZN316.H12INVIVO.0.P.C.pwm
PFM	ZN316.H12INVIVO.0.P.C.pfm
Alignment	ZN316.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN316.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN316.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN316.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN316.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN316.H12INVIVO.0.P.C_homer_format_0.001.txt ZN316.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN316.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	27.0	745.0	113.0	115.0
02	24.0	745.0	87.0	144.0
03	89.0	37.0	60.0	814.0
04	53.0	48.0	869.0	30.0
05	28.0	731.0	138.0	103.0
06	4.0	953.0	6.0	37.0
07	5.0	830.0	4.0	161.0
08	47.0	26.0	62.0	865.0
09	11.0	965.0	15.0	9.0
10	854.0	53.0	44.0	49.0
11	186.0	47.0	430.0	337.0
12	118.0	54.0	762.0	66.0
13	217.0	92.0	649.0	42.0
14	659.0	61.0	186.0	94.0
15	84.0	37.0	854.0	25.0
16	23.0	815.0	32.0	130.0
17	35.0	90.0	46.0	829.0
18	17.0	101.0	58.0	824.0
19	491.0	295.0	125.0	89.0
20	49.0	716.0	47.0	188.0
21	719.0	87.0	84.0	110.0
22	160.0	161.0	393.0	286.0
23	32.0	92.0	57.0	819.0
24	46.0	769.0	40.0	145.0

PFM

	A	C	G	T
01	0.027	0.745	0.113	0.115
02	0.024	0.745	0.087	0.144
03	0.089	0.037	0.06	0.814
04	0.053	0.048	0.869	0.03
05	0.028	0.731	0.138	0.103
06	0.004	0.953	0.006	0.037
07	0.005	0.83	0.004	0.161
08	0.047	0.026	0.062	0.865
09	0.011	0.965	0.015	0.009
10	0.854	0.053	0.044	0.049
11	0.186	0.047	0.43	0.337
12	0.118	0.054	0.762	0.066
13	0.217	0.092	0.649	0.042
14	0.659	0.061	0.186	0.094
15	0.084	0.037	0.854	0.025
16	0.023	0.815	0.032	0.13
17	0.035	0.09	0.046	0.829
18	0.017	0.101	0.058	0.824
19	0.491	0.295	0.125	0.089
20	0.049	0.716	0.047	0.188
21	0.719	0.087	0.084	0.11
22	0.16	0.161	0.393	0.286
23	0.032	0.092	0.057	0.819
24	0.046	0.769	0.04	0.145

PWM

	A	C	G	T
01	-2.171	1.087	-0.786	-0.769
02	-2.281	1.087	-1.043	-0.547
03	-1.02	-1.872	-1.406	1.176
04	-1.526	-1.622	1.241	-2.071
05	-2.136	1.068	-0.589	-0.877
06	-3.783	1.333	-3.484	-1.872
07	-3.622	1.195	-3.783	-0.436
08	-1.642	-2.206	-1.374	1.236
09	-2.985	1.346	-2.711	-3.156
10	1.224	-1.526	-1.706	-1.602
11	-0.293	-1.642	0.539	0.297
12	-0.743	-1.508	1.11	-1.313
13	-0.141	-0.988	0.95	-1.75
14	0.965	-1.39	-0.293	-0.967
15	-1.077	-1.872	1.224	-2.243
16	-2.32	1.177	-2.01	-0.648
17	-1.925	-1.01	-1.663	1.194
18	-2.598	-0.896	-1.439	1.188
19	0.672	0.164	-0.686	-1.02
20	-1.602	1.048	-1.642	-0.283
21	1.052	-1.043	-1.077	-0.812
22	-0.442	-0.436	0.45	0.134
23	-2.01	-0.988	-1.455	1.182
24	-1.663	1.119	-1.797	-0.54

Standard thresholds

P-value	Threshold
0.001	0.48626
0.0005	1.78191
0.0001	4.55656