ZN304.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN304.H12INVITRO.0.P.D
Gene (human)	ZNF304 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	YChnCCCCMRKYvRRCCYTCAGATGAvWvYv
GC content	55.47%
Information content (bits; total / per base)	28.244 / 0.911
Data sources	ChIP-Seq
Aligned words	868

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.937	0.946	0.925	0.934	0.92	0.932	12.654	13.219	504.567	589.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.69
HGNC	HGNC:13505
MGI
EntrezGene (human)	GeneID:57343 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN304_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9HCX3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN304.H12INVITRO.0.P.D.pcm
PWM	ZN304.H12INVITRO.0.P.D.pwm
PFM	ZN304.H12INVITRO.0.P.D.pfm
Alignment	ZN304.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN304.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN304.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN304.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN304.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN304.H12INVITRO.0.P.D_homer_format_0.001.txt ZN304.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN304.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	50.0	538.0	37.0	243.0
02	40.0	703.0	24.0	101.0
03	293.0	210.0	41.0	324.0
04	76.0	76.0	328.0	388.0
05	15.0	681.0	39.0	133.0
06	12.0	797.0	6.0	53.0
07	38.0	732.0	11.0	87.0
08	19.0	797.0	7.0	45.0
09	644.0	120.0	84.0	20.0
10	158.0	81.0	601.0	28.0
11	38.0	99.0	113.0	618.0
12	27.0	455.0	28.0	358.0
13	301.0	145.0	368.0	54.0
14	687.0	40.0	110.0	31.0
15	197.0	21.0	623.0	27.0
16	25.0	708.0	85.0	50.0
17	21.0	754.0	7.0	86.0
18	42.0	130.0	17.0	679.0
19	11.0	128.0	31.0	698.0
20	7.0	816.0	31.0	14.0
21	699.0	19.0	65.0	85.0
22	36.0	29.0	781.0	22.0
23	751.0	50.0	46.0	21.0
24	18.0	19.0	26.0	805.0
25	57.0	42.0	736.0	33.0
26	774.0	33.0	45.0	16.0
27	93.0	251.0	470.0	54.0
28	510.0	67.0	72.0	219.0
29	168.0	391.0	231.0	78.0
30	66.0	587.0	35.0	180.0
31	485.0	118.0	191.0	74.0

PFM

	A	C	G	T
01	0.058	0.62	0.043	0.28
02	0.046	0.81	0.028	0.116
03	0.338	0.242	0.047	0.373
04	0.088	0.088	0.378	0.447
05	0.017	0.785	0.045	0.153
06	0.014	0.918	0.007	0.061
07	0.044	0.843	0.013	0.1
08	0.022	0.918	0.008	0.052
09	0.742	0.138	0.097	0.023
10	0.182	0.093	0.692	0.032
11	0.044	0.114	0.13	0.712
12	0.031	0.524	0.032	0.412
13	0.347	0.167	0.424	0.062
14	0.791	0.046	0.127	0.036
15	0.227	0.024	0.718	0.031
16	0.029	0.816	0.098	0.058
17	0.024	0.869	0.008	0.099
18	0.048	0.15	0.02	0.782
19	0.013	0.147	0.036	0.804
20	0.008	0.94	0.036	0.016
21	0.805	0.022	0.075	0.098
22	0.041	0.033	0.9	0.025
23	0.865	0.058	0.053	0.024
24	0.021	0.022	0.03	0.927
25	0.066	0.048	0.848	0.038
26	0.892	0.038	0.052	0.018
27	0.107	0.289	0.541	0.062
28	0.588	0.077	0.083	0.252
29	0.194	0.45	0.266	0.09
30	0.076	0.676	0.04	0.207
31	0.559	0.136	0.22	0.085

PWM

	A	C	G	T
01	-1.442	0.903	-1.732	0.112
02	-1.657	1.17	-2.142	-0.756
03	0.298	-0.033	-1.634	0.398
04	-1.035	-1.035	0.41	0.578
05	-2.573	1.138	-1.682	-0.485
06	-2.771	1.295	-3.348	-1.386
07	-1.707	1.21	-2.847	-0.902
08	-2.358	1.295	-3.225	-1.544
09	1.083	-0.586	-0.937	-2.311
10	-0.314	-0.973	1.014	-1.997
11	-1.707	-0.776	-0.645	1.042
12	-2.031	0.736	-1.997	0.498
13	0.325	-0.399	0.525	-1.368
14	1.147	-1.657	-0.672	-1.901
15	-0.096	-2.266	1.05	-2.031
16	-2.103	1.177	-0.925	-1.442
17	-2.266	1.24	-3.225	-0.914
18	-1.611	-0.507	-2.46	1.135
19	-2.847	-0.523	-1.901	1.163
20	-3.225	1.319	-1.901	-2.635
21	1.164	-2.358	-1.188	-0.925
22	-1.758	-1.964	1.275	-2.223
23	1.236	-1.442	-1.523	-2.266
24	-2.407	-2.358	-2.067	1.305
25	-1.315	-1.611	1.216	-1.841
26	1.266	-1.841	-1.544	-2.515
27	-0.837	0.145	0.769	-1.368
28	0.85	-1.158	-1.088	0.009
29	-0.254	0.585	0.062	-1.009
30	-1.173	0.99	-1.785	-0.185
31	0.8	-0.603	-0.127	-1.061

Standard thresholds

P-value	Threshold
0.001	-2.24239
0.0005	-0.77604
0.0001	2.37791