ZN302.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN302.H12RSNP.0.P.D
Gene (human)	ZNF302 (GeneCards)
Gene synonyms (human)	ZNF135L, ZNF140L, ZNF327
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GGAACMACAGTCACTCAACTACA
GC content	48.91%
Information content (bits; total / per base)	34.192 / 1.487
Data sources	ChIP-Seq
Aligned words	80

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.85	0.97	0.84	0.969	0.87	0.982	13.47	20.48	24.77	109.143

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF302-like {2.3.3.44} (TFClass)
TFClass ID	TFClass: 2.3.3.44.1
HGNC	HGNC:13848
MGI
EntrezGene (human)	GeneID:55900 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN302_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NR11 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN302.H12RSNP.0.P.D.pcm
PWM	ZN302.H12RSNP.0.P.D.pwm
PFM	ZN302.H12RSNP.0.P.D.pfm
Alignment	ZN302.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN302.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN302.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN302.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN302.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN302.H12RSNP.0.P.D_homer_format_0.001.txt ZN302.H12RSNP.0.P.D_homer_format_0.0005.txt ZN302.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	6.0	4.0	67.0	3.0
02	6.0	2.0	72.0	0.0
03	69.0	5.0	2.0	4.0
04	70.0	2.0	6.0	2.0
05	1.0	77.0	2.0	0.0
06	12.0	58.0	0.0	10.0
07	58.0	1.0	21.0	0.0
08	3.0	76.0	1.0	0.0
09	77.0	0.0	2.0	1.0
10	2.0	3.0	75.0	0.0
11	3.0	0.0	2.0	75.0
12	1.0	77.0	1.0	1.0
13	73.0	1.0	4.0	2.0
14	0.0	80.0	0.0	0.0
15	3.0	1.0	2.0	74.0
16	1.0	79.0	0.0	0.0
17	75.0	5.0	0.0	0.0
18	74.0	2.0	2.0	2.0
19	1.0	77.0	2.0	0.0
20	2.0	2.0	0.0	76.0
21	69.0	1.0	9.0	1.0
22	3.0	67.0	3.0	7.0
23	70.0	5.0	2.0	3.0

PFM

	A	C	G	T
01	0.075	0.05	0.838	0.038
02	0.075	0.025	0.9	0.0
03	0.863	0.063	0.025	0.05
04	0.875	0.025	0.075	0.025
05	0.013	0.963	0.025	0.0
06	0.15	0.725	0.0	0.125
07	0.725	0.013	0.263	0.0
08	0.038	0.95	0.013	0.0
09	0.963	0.0	0.025	0.013
10	0.025	0.038	0.938	0.0
11	0.038	0.0	0.025	0.938
12	0.013	0.963	0.013	0.013
13	0.913	0.013	0.05	0.025
14	0.0	1.0	0.0	0.0
15	0.038	0.013	0.025	0.925
16	0.013	0.988	0.0	0.0
17	0.938	0.063	0.0	0.0
18	0.925	0.025	0.025	0.025
19	0.013	0.963	0.025	0.0
20	0.025	0.025	0.0	0.95
21	0.863	0.013	0.113	0.013
22	0.038	0.838	0.038	0.088
23	0.875	0.063	0.025	0.038

PWM

	A	C	G	T
01	-1.09	-1.421	1.172	-1.639
02	-1.09	-1.919	1.243	-2.958
03	1.201	-1.242	-1.919	-1.421
04	1.215	-1.919	-1.09	-1.919
05	-2.309	1.309	-1.919	-2.958
06	-0.477	1.03	-2.958	-0.643
07	1.03	-2.309	0.046	-2.958
08	-1.639	1.296	-2.309	-2.958
09	1.309	-2.958	-1.919	-2.309
10	-1.919	-1.639	1.283	-2.958
11	-1.639	-2.958	-1.919	1.283
12	-2.309	1.309	-2.309	-2.309
13	1.256	-2.309	-1.421	-1.919
14	-2.958	1.347	-2.958	-2.958
15	-1.639	-2.309	-1.919	1.27
16	-2.309	1.334	-2.958	-2.958
17	1.283	-1.242	-2.958	-2.958
18	1.27	-1.919	-1.919	-1.919
19	-2.309	1.309	-1.919	-2.958
20	-1.919	-1.919	-2.958	1.296
21	1.201	-2.309	-0.737	-2.309
22	-1.639	1.172	-1.639	-0.958
23	1.215	-1.242	-1.919	-1.639

Standard thresholds

P-value	Threshold
0.001	-4.05434
0.0005	-2.47399
0.0001	0.93036