ZN285.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN285.H12CORE.0.P.C
Gene (human)	ZNF285 (GeneCards)
Gene synonyms (human)	ZNF285A
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	GCYvATKhCYvTRGTGTMAAYRY
GC content	44.79%
Information content (bits; total / per base)	22.341 / 0.971
Data sources	ChIP-Seq
Aligned words	93

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.898	0.898	0.885	0.885	0.941	0.941	13.51	13.51	13.5	27.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF214-like {2.3.3.56} (TFClass)
TFClass ID	TFClass: 2.3.3.56.2
HGNC	HGNC:13079
MGI
EntrezGene (human)	GeneID:26974 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN285_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96NJ3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN285.H12CORE.0.P.C.pcm
PWM	ZN285.H12CORE.0.P.C.pwm
PFM	ZN285.H12CORE.0.P.C.pfm
Alignment	ZN285.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN285.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN285.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN285.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN285.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN285.H12CORE.0.P.C_homer_format_0.001.txt ZN285.H12CORE.0.P.C_homer_format_0.0005.txt ZN285.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	4.0	2.0	85.0	2.0
02	11.0	77.0	2.0	3.0
03	2.0	68.0	2.0	21.0
04	45.0	25.0	18.0	5.0
05	83.0	2.0	4.0	4.0
06	8.0	4.0	0.0	81.0
07	1.0	7.0	16.0	69.0
08	12.0	35.0	7.0	39.0
09	1.0	85.0	0.0	7.0
10	10.0	40.0	4.0	39.0
11	28.0	14.0	39.0	12.0
12	2.0	5.0	2.0	84.0
13	12.0	5.0	70.0	6.0
14	7.0	3.0	82.0	1.0
15	12.0	1.0	5.0	75.0
16	4.0	4.0	78.0	7.0
17	0.0	4.0	2.0	87.0
18	66.0	14.0	7.0	6.0
19	78.0	13.0	1.0	1.0
20	77.0	1.0	12.0	3.0
21	1.0	20.0	5.0	67.0
22	63.0	5.0	15.0	10.0
23	4.0	60.0	8.0	21.0

PFM

	A	C	G	T
01	0.043	0.022	0.914	0.022
02	0.118	0.828	0.022	0.032
03	0.022	0.731	0.022	0.226
04	0.484	0.269	0.194	0.054
05	0.892	0.022	0.043	0.043
06	0.086	0.043	0.0	0.871
07	0.011	0.075	0.172	0.742
08	0.129	0.376	0.075	0.419
09	0.011	0.914	0.0	0.075
10	0.108	0.43	0.043	0.419
11	0.301	0.151	0.419	0.129
12	0.022	0.054	0.022	0.903
13	0.129	0.054	0.753	0.065
14	0.075	0.032	0.882	0.011
15	0.129	0.011	0.054	0.806
16	0.043	0.043	0.839	0.075
17	0.0	0.043	0.022	0.935
18	0.71	0.151	0.075	0.065
19	0.839	0.14	0.011	0.011
20	0.828	0.011	0.129	0.032
21	0.011	0.215	0.054	0.72
22	0.677	0.054	0.161	0.108
23	0.043	0.645	0.086	0.226

PWM

	A	C	G	T
01	-1.558	-2.052	1.262	-2.052
02	-0.698	1.165	-2.052	-1.775
03	-2.052	1.042	-2.052	-0.097
04	0.638	0.069	-0.242	-1.38
05	1.239	-2.052	-1.558	-1.558
06	-0.982	-1.558	-3.069	1.214
07	-2.436	-1.098	-0.353	1.057
08	-0.619	0.393	-1.098	0.498
09	-2.436	1.262	-3.069	-1.098
10	-0.784	0.523	-1.558	0.498
11	0.178	-0.477	0.498	-0.619
12	-2.052	-1.38	-2.052	1.25
13	-0.619	-1.38	1.071	-1.229
14	-1.098	-1.775	1.227	-2.436
15	-0.619	-2.436	-1.38	1.139
16	-1.558	-1.558	1.177	-1.098
17	-3.069	-1.558	-2.052	1.285
18	1.013	-0.477	-1.098	-1.229
19	1.177	-0.545	-2.436	-2.436
20	1.165	-2.436	-0.619	-1.775
21	-2.436	-0.143	-1.38	1.028
22	0.967	-1.38	-0.413	-0.784
23	-1.558	0.919	-0.982	-0.097

Standard thresholds

P-value	Threshold
0.001	1.48491
0.0005	2.69251
0.0001	5.27931