ZN284.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN284.H12INVITRO.0.P.D
Gene (human)	ZNF284 (GeneCards)
Gene synonyms (human)	ZNF284L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	16
Consensus	GTGCAGTGGTGYGATC
GC content	60.39%
Information content (bits; total / per base)	25.577 / 1.599
Data sources	ChIP-Seq
Aligned words	995

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.948	0.949	0.88	0.887	0.989	0.99	13.84	13.963	584.94	618.347

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF222-like {2.3.3.47} (TFClass)
TFClass ID	TFClass: 2.3.3.47.8
HGNC	HGNC:13078
MGI
EntrezGene (human)	GeneID:342909 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN284_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q2VY69 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN284.H12INVITRO.0.P.D.pcm
PWM	ZN284.H12INVITRO.0.P.D.pwm
PFM	ZN284.H12INVITRO.0.P.D.pfm
Alignment	ZN284.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN284.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN284.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN284.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN284.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN284.H12INVITRO.0.P.D_homer_format_0.001.txt ZN284.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN284.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	54.0	15.0	918.0	8.0
02	27.0	23.0	24.0	921.0
03	49.0	13.0	924.0	9.0
04	5.0	953.0	5.0	32.0
05	940.0	5.0	30.0	20.0
06	87.0	6.0	898.0	4.0
07	6.0	2.0	2.0	985.0
08	19.0	1.0	975.0	0.0
09	0.0	2.0	992.0	1.0
10	1.0	130.0	1.0	863.0
11	50.0	0.0	943.0	2.0
12	51.0	779.0	32.0	133.0
13	110.0	10.0	871.0	4.0
14	883.0	12.0	96.0	4.0
15	1.0	2.0	1.0	991.0
16	32.0	947.0	2.0	14.0

PFM

	A	C	G	T
01	0.054	0.015	0.923	0.008
02	0.027	0.023	0.024	0.926
03	0.049	0.013	0.929	0.009
04	0.005	0.958	0.005	0.032
05	0.945	0.005	0.03	0.02
06	0.087	0.006	0.903	0.004
07	0.006	0.002	0.002	0.99
08	0.019	0.001	0.98	0.0
09	0.0	0.002	0.997	0.001
10	0.001	0.131	0.001	0.867
11	0.05	0.0	0.948	0.002
12	0.051	0.783	0.032	0.134
13	0.111	0.01	0.875	0.004
14	0.887	0.012	0.096	0.004
15	0.001	0.002	0.001	0.996
16	0.032	0.952	0.002	0.014

PWM

	A	C	G	T
01	-1.503	-2.706	1.301	-3.249
02	-2.166	-2.316	-2.276	1.304
03	-1.597	-2.834	1.307	-3.151
04	-3.617	1.338	-3.617	-2.005
05	1.324	-3.617	-2.066	-2.445
06	-1.038	-3.479	1.279	-3.778
07	-3.479	-4.208	-4.208	1.371
08	-2.492	-4.521	1.361	-4.978
09	-4.978	-4.208	1.378	-4.521
10	-4.521	-0.643	-4.521	1.239
11	-1.577	-4.978	1.328	-4.208
12	-1.558	1.137	-2.005	-0.62
13	-0.807	-3.062	1.248	-3.778
14	1.262	-2.904	-0.941	-3.778
15	-4.521	-4.208	-4.521	1.377
16	-2.005	1.332	-4.208	-2.768

Standard thresholds

P-value	Threshold
0.001	-4.19194
0.0005	-2.42614
0.0001	1.33591