ZN283.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN283.H12RSNP.0.P.D
Gene (human)	ZNF283 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	bKbbbKGYKGRKvYKGSYKGKSY
GC content	64.62%
Information content (bits; total / per base)	16.574 / 0.721
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.901	0.906	0.794	0.802	0.898	0.912	5.8	6.008	316.134	341.886

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.1
HGNC	HGNC:13077
MGI
EntrezGene (human)	GeneID:284349 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN283_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N7M2 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN283.H12RSNP.0.P.D.pcm
PWM	ZN283.H12RSNP.0.P.D.pwm
PFM	ZN283.H12RSNP.0.P.D.pfm
Alignment	ZN283.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN283.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN283.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN283.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN283.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN283.H12RSNP.0.P.D_homer_format_0.001.txt ZN283.H12RSNP.0.P.D_homer_format_0.0005.txt ZN283.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	123.0	159.0	560.0	161.0
02	142.0	80.0	608.0	173.0
03	130.0	415.0	325.0	133.0
04	68.0	357.0	114.0	464.0
05	168.0	283.0	171.0	381.0
06	51.0	33.0	689.0	230.0
07	8.0	27.0	954.0	14.0
08	40.0	737.0	81.0	145.0
09	44.0	78.0	80.0	801.0
10	16.0	26.0	892.0	69.0
11	654.0	48.0	281.0	20.0
12	16.0	39.0	233.0	715.0
13	102.0	784.0	102.0	15.0
14	80.0	128.0	92.0	703.0
15	101.0	33.0	490.0	379.0
16	34.0	29.0	929.0	11.0
17	66.0	388.0	482.0	67.0
18	74.0	586.0	51.0	292.0
19	68.0	119.0	192.0	624.0
20	46.0	45.0	877.0	35.0
21	57.0	76.0	782.0	88.0
22	51.0	504.0	346.0	102.0
23	61.0	516.0	86.0	340.0

PFM

	A	C	G	T
01	0.123	0.159	0.558	0.161
02	0.142	0.08	0.606	0.172
03	0.13	0.414	0.324	0.133
04	0.068	0.356	0.114	0.463
05	0.167	0.282	0.17	0.38
06	0.051	0.033	0.687	0.229
07	0.008	0.027	0.951	0.014
08	0.04	0.735	0.081	0.145
09	0.044	0.078	0.08	0.799
10	0.016	0.026	0.889	0.069
11	0.652	0.048	0.28	0.02
12	0.016	0.039	0.232	0.713
13	0.102	0.782	0.102	0.015
14	0.08	0.128	0.092	0.701
15	0.101	0.033	0.489	0.378
16	0.034	0.029	0.926	0.011
17	0.066	0.387	0.481	0.067
18	0.074	0.584	0.051	0.291
19	0.068	0.119	0.191	0.622
20	0.046	0.045	0.874	0.035
21	0.057	0.076	0.78	0.088
22	0.051	0.502	0.345	0.102
23	0.061	0.514	0.086	0.339

PWM

	A	C	G	T
01	-0.705	-0.452	0.8	-0.439
02	-0.563	-1.128	0.882	-0.368
03	-0.651	0.501	0.258	-0.628
04	-1.287	0.351	-0.78	0.612
05	-0.397	0.12	-0.38	0.416
06	-1.566	-1.984	1.006	-0.086
07	-3.256	-2.173	1.331	-2.776
08	-1.8	1.074	-1.116	-0.543
09	-1.709	-1.153	-1.128	1.157
10	-2.656	-2.209	1.264	-1.272
11	0.954	-1.625	0.113	-2.453
12	-2.656	-1.824	-0.073	1.043
13	-0.89	1.135	-0.89	-2.714
14	-1.128	-0.666	-0.991	1.026
15	-0.899	-1.984	0.667	0.411
16	-1.955	-2.106	1.305	-2.988
17	-1.316	0.434	0.65	-1.301
18	-1.204	0.845	-1.566	0.151
19	-1.287	-0.738	-0.265	0.908
20	-1.666	-1.687	1.247	-1.928
21	-1.458	-1.178	1.133	-1.035
22	-1.566	0.695	0.32	-0.89
23	-1.393	0.718	-1.057	0.303

Standard thresholds

P-value	Threshold
0.001	2.88131
0.0005	3.96506
0.0001	6.27191