MotifZN274.H12INVIVO.1.P.B
Gene (human)ZNF274
(GeneCards)
Gene synonyms (human)ZKSCAN19
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length21
ConsensusGAGAAYTCAYdSWKShRARWR
GC content43.78%
Information content (bits; total / per base)20.581 / 0.98
Data sourcesChIP-Seq
Aligned words222

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 14 (80) 0.65 0.802 0.497 0.662 0.786 0.984 8.949 16.056 8.377 83.092

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.99 0.986 0.907 0.906 0.725 0.759
best 0.995 0.993 0.952 0.947 0.766 0.796
Methyl HT-SELEX, 1 experiments median 0.995 0.993 0.952 0.947 0.766 0.796
best 0.995 0.993 0.952 0.947 0.766 0.796
Non-Methyl HT-SELEX, 1 experiments median 0.985 0.979 0.863 0.865 0.684 0.722
best 0.985 0.979 0.863 0.865 0.684 0.722
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.6
HGNCHGNC:13068
MGI
EntrezGene (human)GeneID:10782
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN274_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96GC6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 14 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0127.02.0191.02.0
02214.00.01.07.0
032.00.0218.02.0
04165.02.052.03.0
05209.05.05.03.0
0613.0122.09.078.0
0715.013.09.0185.0
085.0211.04.02.0
09201.016.05.00.0
1019.087.03.0113.0
11172.08.021.021.0
1211.0176.019.016.0
1354.010.013.0145.0
1417.018.0168.019.0
1527.032.0140.023.0
16110.026.022.064.0
1731.025.0142.024.0
18179.023.011.09.0
1956.013.0139.014.0
20168.016.018.020.0
21154.09.037.022.0
PFM
ACGT
010.1220.0090.860.009
020.9640.00.0050.032
030.0090.00.9820.009
040.7430.0090.2340.014
050.9410.0230.0230.014
060.0590.550.0410.351
070.0680.0590.0410.833
080.0230.950.0180.009
090.9050.0720.0230.0
100.0860.3920.0140.509
110.7750.0360.0950.095
120.050.7930.0860.072
130.2430.0450.0590.653
140.0770.0810.7570.086
150.1220.1440.6310.104
160.4950.1170.0990.288
170.140.1130.640.108
180.8060.1040.050.041
190.2520.0590.6260.063
200.7570.0720.0810.09
210.6940.0410.1670.099
PWM
ACGT
01-0.696-2.8311.219-2.831
021.332-3.74-3.186-1.918
03-2.831-3.741.35-2.831
041.074-2.831-0.064-2.57
051.308-2.192-2.192-2.57
06-1.3770.775-1.7030.333
07-1.246-1.377-1.7031.187
08-2.1921.318-2.363-2.831
091.27-1.187-2.192-3.74
10-1.0270.441-2.570.699
111.115-1.805-0.934-0.934
12-1.5271.138-1.027-1.187
13-0.027-1.611-1.3770.946
14-1.131-1.0781.092-1.027
15-0.696-0.5330.911-0.848
160.672-0.732-0.890.139
17-0.564-0.7690.925-0.808
181.154-0.848-1.527-1.703
190.009-1.3770.904-1.309
201.092-1.187-1.078-0.979
211.005-1.703-0.394-0.89
Standard thresholds
P-value Threshold
0.001 1.45946
0.0005 2.70041
0.0001 5.34526