MotifZN274.H12INVIVO.0.SM.B
Gene (human)ZNF274
(GeneCards)
Gene synonyms (human)ZKSCAN19
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length14
ConsensusvhGAGAACTCAYRb
GC content46.4%
Information content (bits; total / per base)17.026 / 1.216
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9984

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 14 (80) 0.701 0.871 0.572 0.804 0.764 0.985 4.27 6.313 12.643 94.638

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 1.0 0.999 0.99 0.989 0.81 0.845
best 1.0 1.0 0.999 0.998 0.849 0.876
Methyl HT-SELEX, 1 experiments median 1.0 1.0 0.999 0.998 0.849 0.876
best 1.0 1.0 0.999 0.998 0.849 0.876
Non-Methyl HT-SELEX, 1 experiments median 0.999 0.999 0.981 0.98 0.77 0.813
best 0.999 0.999 0.981 0.98 0.77 0.813
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.6
HGNCHGNC:13068
MGI
EntrezGene (human)GeneID:10782
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN274_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96GC6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 14 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012967.751706.753677.751631.75
021785.04847.0480.02872.0
03761.017.09178.028.0
049899.034.024.027.0
0513.07.09949.015.0
068000.02.01964.018.0
079965.04.04.011.0
0814.09635.0246.089.0
09122.0102.057.09703.0
1033.09892.025.034.0
118302.01339.0208.0135.0
121074.03117.078.05715.0
136556.75905.751956.75564.75
141539.253826.251580.253038.25
PFM
ACGT
010.2970.1710.3680.163
020.1790.4850.0480.288
030.0760.0020.9190.003
040.9910.0030.0020.003
050.0010.0010.9960.002
060.8010.00.1970.002
070.9980.00.00.001
080.0010.9650.0250.009
090.0120.010.0060.972
100.0030.9910.0030.003
110.8320.1340.0210.014
120.1080.3120.0080.572
130.6570.0910.1960.057
140.1540.3830.1580.304
PWM
ACGT
010.173-0.380.387-0.425
02-0.3350.663-1.6450.14
03-1.186-4.8631.301-4.412
041.377-4.231-4.554-4.446
05-5.095-5.5931.382-4.973
061.164-6.364-0.239-4.813
071.384-5.982-5.982-5.235
08-5.0321.35-2.309-3.309
09-3.001-3.176-3.7411.357
10-4.2591.376-4.516-4.231
111.201-0.622-2.475-2.901
12-0.8420.222-3.4380.828
130.965-1.012-0.243-1.483
14-0.4830.427-0.4570.196
Standard thresholds
P-value Threshold
0.001 0.30326
0.0005 1.89326
0.0001 5.26151