MotifZN274.H12INVITRO.2.P.B
Gene (human)ZNF274
(GeneCards)
Gene synonyms (human)ZKSCAN19
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length21
ConsensusMMbvMWKSWGRRARvbChYWY
GC content47.24%
Information content (bits; total / per base)12.301 / 0.586
Data sourcesChIP-Seq
Aligned words926

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 14 (80) 0.594 0.699 0.423 0.494 0.752 0.97 8.689 15.94 1.462 17.051

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.903 0.872 0.797 0.772 0.678 0.68
best 0.933 0.907 0.84 0.814 0.715 0.713
Methyl HT-SELEX, 1 experiments median 0.933 0.907 0.84 0.814 0.715 0.713
best 0.933 0.907 0.84 0.814 0.715 0.713
Non-Methyl HT-SELEX, 1 experiments median 0.872 0.836 0.753 0.731 0.642 0.647
best 0.872 0.836 0.753 0.731 0.642 0.647
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.6
HGNCHGNC:13068
MGI
EntrezGene (human)GeneID:10782
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN274_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96GC6
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 14 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01143.0564.0115.0104.0
02688.086.077.075.0
03151.0207.0177.0391.0
04493.0128.0211.094.0
05193.0579.070.084.0
06282.065.074.0505.0
0799.038.0579.0210.0
0883.0145.0660.038.0
09520.028.0107.0271.0
1074.081.0744.027.0
11645.028.0142.0111.0
12127.073.0704.022.0
13758.083.070.015.0
14721.050.0129.026.0
15444.0215.0202.065.0
1683.0452.0100.0291.0
1755.0751.064.056.0
18274.0402.044.0206.0
1943.0174.083.0626.0
20559.076.095.0196.0
2159.0440.075.0352.0
PFM
ACGT
010.1540.6090.1240.112
020.7430.0930.0830.081
030.1630.2240.1910.422
040.5320.1380.2280.102
050.2080.6250.0760.091
060.3050.070.080.545
070.1070.0410.6250.227
080.090.1570.7130.041
090.5620.030.1160.293
100.080.0870.8030.029
110.6970.030.1530.12
120.1370.0790.760.024
130.8190.090.0760.016
140.7790.0540.1390.028
150.4790.2320.2180.07
160.090.4880.1080.314
170.0590.8110.0690.06
180.2960.4340.0480.222
190.0460.1880.090.676
200.6040.0820.1030.212
210.0640.4750.0810.38
PWM
ACGT
01-0.4770.886-0.692-0.791
021.084-0.978-1.086-1.112
03-0.423-0.111-0.2660.521
040.752-0.587-0.092-0.891
05-0.180.912-1.179-1.001
060.196-1.252-1.1250.776
07-0.84-1.770.912-0.097
08-1.013-0.4631.043-1.77
090.805-2.061-0.7630.156
10-1.125-1.0371.162-2.095
111.02-2.061-0.484-0.727
12-0.594-1.1381.107-2.286
131.181-1.013-1.179-2.636
141.131-1.506-0.579-2.13
150.648-0.073-0.135-1.252
16-1.0130.666-0.830.227
17-1.4141.172-1.267-1.397
180.1670.549-1.63-0.116
19-1.652-0.283-1.0130.99
200.877-1.099-0.88-0.165
21-1.3460.639-1.1120.417
Standard thresholds
P-value Threshold
0.001 4.22141
0.0005 5.09021
0.0001 6.94216