ZN273.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN273.H12INVITRO.0.P.D
Gene (human)	ZNF273 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	SRGCYdCCShYYSYdGGbCYYCh
GC content	68.08%
Information content (bits; total / per base)	17.889 / 0.778
Data sources	ChIP-Seq
Aligned words	973

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.822	0.839	0.77	0.807	0.843	0.849	7.402	7.858	120.926	157.398

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.155
HGNC	HGNC:13067
MGI
EntrezGene (human)	GeneID:10793 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN273_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14593 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN273.H12INVITRO.0.P.D.pcm
PWM	ZN273.H12INVITRO.0.P.D.pwm
PFM	ZN273.H12INVITRO.0.P.D.pfm
Alignment	ZN273.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN273.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN273.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN273.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN273.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN273.H12INVITRO.0.P.D_homer_format_0.001.txt ZN273.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN273.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	55.0	223.0	643.0	52.0
02	638.0	137.0	141.0	57.0
03	49.0	67.0	822.0	35.0
04	58.0	838.0	66.0	11.0
05	23.0	269.0	35.0	646.0
06	570.0	83.0	206.0	114.0
07	23.0	869.0	67.0	14.0
08	41.0	819.0	44.0	69.0
09	87.0	657.0	116.0	113.0
10	451.0	265.0	80.0	177.0
11	26.0	775.0	74.0	98.0
12	45.0	201.0	98.0	629.0
13	33.0	638.0	192.0	110.0
14	62.0	606.0	35.0	270.0
15	342.0	85.0	444.0	102.0
16	28.0	67.0	858.0	20.0
17	73.0	85.0	794.0	21.0
18	37.0	188.0	424.0	324.0
19	27.0	761.0	26.0	159.0
20	11.0	446.0	25.0	491.0
21	12.0	533.0	52.0	376.0
22	47.0	830.0	41.0	55.0
23	94.0	434.0	76.0	369.0

PFM

	A	C	G	T
01	0.057	0.229	0.661	0.053
02	0.656	0.141	0.145	0.059
03	0.05	0.069	0.845	0.036
04	0.06	0.861	0.068	0.011
05	0.024	0.276	0.036	0.664
06	0.586	0.085	0.212	0.117
07	0.024	0.893	0.069	0.014
08	0.042	0.842	0.045	0.071
09	0.089	0.675	0.119	0.116
10	0.464	0.272	0.082	0.182
11	0.027	0.797	0.076	0.101
12	0.046	0.207	0.101	0.646
13	0.034	0.656	0.197	0.113
14	0.064	0.623	0.036	0.277
15	0.351	0.087	0.456	0.105
16	0.029	0.069	0.882	0.021
17	0.075	0.087	0.816	0.022
18	0.038	0.193	0.436	0.333
19	0.028	0.782	0.027	0.163
20	0.011	0.458	0.026	0.505
21	0.012	0.548	0.053	0.386
22	0.048	0.853	0.042	0.057
23	0.097	0.446	0.078	0.379

PWM

	A	C	G	T
01	-1.463	-0.086	0.968	-1.517
02	0.96	-0.569	-0.54	-1.428
03	-1.575	-1.271	1.213	-1.898
04	-1.411	1.232	-1.286	-2.958
05	-2.294	0.1	-1.898	0.972
06	0.848	-1.062	-0.165	-0.75
07	-2.294	1.268	-1.271	-2.746
08	-1.746	1.209	-1.679	-1.242
09	-1.016	0.989	-0.733	-0.759
10	0.614	0.085	-1.098	-0.315
11	-2.179	1.154	-1.174	-0.899
12	-1.657	-0.189	-0.899	0.946
13	-1.954	0.96	-0.235	-0.785
14	-1.347	0.909	-1.898	0.104
15	0.339	-1.038	0.599	-0.859
16	-2.109	-1.271	1.255	-2.423
17	-1.187	-1.038	1.178	-2.378
18	-1.845	-0.256	0.553	0.285
19	-2.144	1.136	-2.179	-0.421
20	-2.958	0.603	-2.216	0.699
21	-2.882	0.781	-1.517	0.433
22	-1.615	1.222	-1.746	-1.463
23	-0.94	0.576	-1.148	0.414

Standard thresholds

P-value	Threshold
0.001	2.43971
0.0005	3.56321
0.0001	5.96136