ZN267.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN267.H12INVIVO.0.P.C
Gene (human)	ZNF267 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	31
Consensus	bbbbSbbvhvGSYhKSKGvRGMdRbSSbbSb
GC content	63.41%
Information content (bits; total / per base)	15.469 / 0.499
Data sources	ChIP-Seq
Aligned words	372

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.975	0.98	0.963	0.967	0.973	0.979	9.301	9.508	573.199	626.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.186
HGNC	HGNC:13060
MGI
EntrezGene (human)	GeneID:10308 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN267_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14586 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN267.H12INVIVO.0.P.C.pcm
PWM	ZN267.H12INVIVO.0.P.C.pwm
PFM	ZN267.H12INVIVO.0.P.C.pfm
Alignment	ZN267.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN267.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN267.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN267.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN267.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN267.H12INVIVO.0.P.C_homer_format_0.001.txt ZN267.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN267.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	52.0	119.0	73.0	128.0
02	39.0	221.0	48.0	64.0
03	55.0	82.0	76.0	159.0
04	36.0	176.0	70.0	90.0
05	41.0	252.0	46.0	33.0
06	44.0	158.0	50.0	120.0
07	27.0	59.0	137.0	149.0
08	58.0	167.0	111.0	36.0
09	83.0	152.0	43.0	94.0
10	74.0	126.0	145.0	27.0
11	23.0	14.0	325.0	10.0
12	4.0	133.0	225.0	10.0
13	20.0	299.0	24.0	29.0
14	208.0	88.0	32.0	44.0
15	41.0	26.0	66.0	239.0
16	22.0	40.0	289.0	21.0
17	33.0	32.0	39.0	268.0
18	32.0	3.0	334.0	3.0
19	164.0	106.0	88.0	14.0
20	217.0	17.0	114.0	24.0
21	39.0	13.0	302.0	18.0
22	231.0	100.0	27.0	14.0
23	78.0	37.0	134.0	123.0
24	42.0	24.0	271.0	35.0
25	44.0	56.0	159.0	113.0
26	60.0	93.0	207.0	12.0
27	45.0	239.0	67.0	21.0
28	23.0	175.0	59.0	115.0
29	28.0	56.0	93.0	195.0
30	17.0	87.0	239.0	29.0
31	27.0	197.0	73.0	75.0

PFM

	A	C	G	T
01	0.14	0.32	0.196	0.344
02	0.105	0.594	0.129	0.172
03	0.148	0.22	0.204	0.427
04	0.097	0.473	0.188	0.242
05	0.11	0.677	0.124	0.089
06	0.118	0.425	0.134	0.323
07	0.073	0.159	0.368	0.401
08	0.156	0.449	0.298	0.097
09	0.223	0.409	0.116	0.253
10	0.199	0.339	0.39	0.073
11	0.062	0.038	0.874	0.027
12	0.011	0.358	0.605	0.027
13	0.054	0.804	0.065	0.078
14	0.559	0.237	0.086	0.118
15	0.11	0.07	0.177	0.642
16	0.059	0.108	0.777	0.056
17	0.089	0.086	0.105	0.72
18	0.086	0.008	0.898	0.008
19	0.441	0.285	0.237	0.038
20	0.583	0.046	0.306	0.065
21	0.105	0.035	0.812	0.048
22	0.621	0.269	0.073	0.038
23	0.21	0.099	0.36	0.331
24	0.113	0.065	0.728	0.094
25	0.118	0.151	0.427	0.304
26	0.161	0.25	0.556	0.032
27	0.121	0.642	0.18	0.056
28	0.062	0.47	0.159	0.309
29	0.075	0.151	0.25	0.524
30	0.046	0.234	0.642	0.078
31	0.073	0.53	0.196	0.202

PWM

	A	C	G	T
01	-0.569	0.243	-0.238	0.315
02	-0.848	0.856	-0.647	-0.367
03	-0.515	-0.124	-0.198	0.53
04	-0.925	0.63	-0.279	-0.032
05	-0.799	0.987	-0.688	-1.008
06	-0.731	0.524	-0.607	0.251
07	-1.199	-0.446	0.382	0.465
08	-0.463	0.578	0.174	-0.925
09	-0.112	0.485	-0.753	0.011
10	-0.225	0.3	0.439	-1.199
11	-1.351	-1.809	1.24	-2.108
12	-2.847	0.353	0.874	-2.108
13	-1.481	1.157	-1.311	-1.131
14	0.796	-0.054	-1.037	-0.731
15	-0.799	-1.235	-0.337	0.934
16	-1.392	-0.823	1.123	-1.436
17	-1.008	-1.037	-0.848	1.048
18	-1.037	-3.049	1.267	-3.049
19	0.56	0.129	-0.054	-1.809
20	0.838	-1.632	0.201	-1.311
21	-0.848	-1.876	1.167	-1.579
22	0.9	0.071	-1.199	-1.809
23	-0.173	-0.898	0.36	0.276
24	-0.776	-1.311	1.059	-0.952
25	-0.731	-0.497	0.53	0.192
26	-0.43	0.0	0.791	-1.947
27	-0.709	0.934	-0.322	-1.436
28	-1.351	0.625	-0.446	0.209
29	-1.165	-0.497	0.0	0.732
30	-1.632	-0.066	0.934	-1.131
31	-1.199	0.742	-0.238	-0.211

Standard thresholds

P-value	Threshold
0.001	3.48256
0.0005	4.47021
0.0001	6.57726