ZN266.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN266.H12INVITRO.0.P.D
Gene (human)	ZNF266 (GeneCards)
Gene synonyms (human)	KIAA2007
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	bbbvhYRCTYACAGbYCYbdv
GC content	52.2%
Information content (bits; total / per base)	15.799 / 0.752
Data sources	ChIP-Seq
Aligned words	1007

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.579	0.977	0.535	0.962	0.597	0.977	3.089	7.312	30.0	568.721

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.165
HGNC	HGNC:13059
MGI
EntrezGene (human)	GeneID:10781 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN266_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q14584 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN266.H12INVITRO.0.P.D.pcm
PWM	ZN266.H12INVITRO.0.P.D.pwm
PFM	ZN266.H12INVITRO.0.P.D.pfm
Alignment	ZN266.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN266.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN266.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN266.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN266.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN266.H12INVITRO.0.P.D_homer_format_0.001.txt ZN266.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN266.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	174.0	192.0	189.0	452.0
02	152.0	188.0	207.0	460.0
03	111.0	236.0	117.0	543.0
04	515.0	192.0	199.0	101.0
05	212.0	201.0	149.0	445.0
06	87.0	184.0	120.0	616.0
07	589.0	8.0	374.0	36.0
08	20.0	934.0	26.0	27.0
09	61.0	24.0	5.0	917.0
10	85.0	776.0	15.0	131.0
11	1001.0	1.0	5.0	0.0
12	48.0	921.0	18.0	20.0
13	858.0	74.0	29.0	46.0
14	15.0	5.0	921.0	66.0
15	114.0	148.0	534.0	211.0
16	47.0	328.0	111.0	521.0
17	44.0	912.0	19.0	32.0
18	44.0	682.0	31.0	250.0
19	35.0	524.0	239.0	209.0
20	283.0	131.0	440.0	153.0
21	244.0	175.0	455.0	133.0

PFM

	A	C	G	T
01	0.173	0.191	0.188	0.449
02	0.151	0.187	0.206	0.457
03	0.11	0.234	0.116	0.539
04	0.511	0.191	0.198	0.1
05	0.211	0.2	0.148	0.442
06	0.086	0.183	0.119	0.612
07	0.585	0.008	0.371	0.036
08	0.02	0.928	0.026	0.027
09	0.061	0.024	0.005	0.911
10	0.084	0.771	0.015	0.13
11	0.994	0.001	0.005	0.0
12	0.048	0.915	0.018	0.02
13	0.852	0.073	0.029	0.046
14	0.015	0.005	0.915	0.066
15	0.113	0.147	0.53	0.21
16	0.047	0.326	0.11	0.517
17	0.044	0.906	0.019	0.032
18	0.044	0.677	0.031	0.248
19	0.035	0.52	0.237	0.208
20	0.281	0.13	0.437	0.152
21	0.242	0.174	0.452	0.132

PWM

	A	C	G	T
01	-0.366	-0.269	-0.284	0.582
02	-0.5	-0.29	-0.194	0.6
03	-0.81	-0.064	-0.758	0.765
04	0.712	-0.269	-0.233	-0.903
05	-0.171	-0.223	-0.52	0.567
06	-1.05	-0.311	-0.733	0.891
07	0.846	-3.26	0.394	-1.905
08	-2.457	1.306	-2.213	-2.177
09	-1.396	-2.288	-3.629	1.288
10	-1.072	1.121	-2.718	-0.647
11	1.375	-4.531	-3.629	-4.988
12	-1.629	1.292	-2.553	-2.457
13	1.221	-1.208	-2.11	-1.67
14	-2.718	-3.629	1.292	-1.32
15	-0.784	-0.526	0.748	-0.175
16	-1.649	0.263	-0.81	0.724
17	-1.713	1.282	-2.504	-2.017
18	-1.713	0.992	-2.047	-0.007
19	-1.932	0.73	-0.052	-0.185
20	0.116	-0.647	0.555	-0.494
21	-0.031	-0.361	0.589	-0.632

Standard thresholds

P-value	Threshold
0.001	2.88136
0.0005	4.01936
0.0001	6.41001