ZN264.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN264.H12INVITRO.0.P.D
Gene (human)	ZNF264 (GeneCards)
Gene synonyms (human)	KIAA0412
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	18
Consensus	RWRGRCRCbRAYYYYRYb
GC content	49.08%
Information content (bits; total / per base)	13.723 / 0.762
Data sources	ChIP-Seq
Aligned words	1004

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.804	0.812	0.79	0.798	0.784	0.804	7.049	7.899	93.77	199.027

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF460-like {2.3.3.54} (TFClass)
TFClass ID	TFClass: 2.3.3.54.2
HGNC	HGNC:13057
MGI
EntrezGene (human)	GeneID:9422 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN264_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O43296 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN264.H12INVITRO.0.P.D.pcm
PWM	ZN264.H12INVITRO.0.P.D.pwm
PFM	ZN264.H12INVITRO.0.P.D.pfm
Alignment	ZN264.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN264.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN264.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN264.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN264.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN264.H12INVITRO.0.P.D_homer_format_0.001.txt ZN264.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN264.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	651.25	130.25	152.25	70.25
02	733.25	48.25	100.25	122.25
03	119.25	33.25	769.25	82.25
04	34.25	14.25	893.25	62.25
05	183.25	133.25	653.25	34.25
06	96.25	880.25	12.25	15.25
07	722.25	34.25	137.25	110.25
08	21.25	879.25	75.25	28.25
09	114.25	115.25	115.25	659.25
10	783.0	69.0	92.0	60.0
11	885.0	40.0	35.0	44.0
12	9.0	203.0	54.0	738.0
13	62.0	653.0	95.0	194.0
14	99.0	641.0	100.0	164.0
15	122.0	594.0	81.0	207.0
16	616.0	128.0	136.0	124.0
17	75.0	199.0	133.0	597.0
18	107.0	330.0	110.0	457.0

PFM

	A	C	G	T
01	0.649	0.13	0.152	0.07
02	0.73	0.048	0.1	0.122
03	0.119	0.033	0.766	0.082
04	0.034	0.014	0.89	0.062
05	0.183	0.133	0.651	0.034
06	0.096	0.877	0.012	0.015
07	0.719	0.034	0.137	0.11
08	0.021	0.876	0.075	0.028
09	0.114	0.115	0.115	0.657
10	0.78	0.069	0.092	0.06
11	0.881	0.04	0.035	0.044
12	0.009	0.202	0.054	0.735
13	0.062	0.65	0.095	0.193
14	0.099	0.638	0.1	0.163
15	0.122	0.592	0.081	0.206
16	0.614	0.127	0.135	0.124
17	0.075	0.198	0.132	0.595
18	0.107	0.329	0.11	0.455

PWM

	A	C	G	T
01	0.949	-0.65	-0.496	-1.256
02	1.068	-1.621	-0.908	-0.712
03	-0.737	-1.978	1.115	-1.102
04	-1.949	-2.761	1.264	-1.374
05	-0.312	-0.627	0.952	-1.949
06	-0.948	1.25	-2.895	-2.7
07	1.052	-1.949	-0.598	-0.814
08	-2.398	1.249	-1.189	-2.132
09	-0.779	-0.77	-0.77	0.961
10	1.133	-1.273	-0.992	-1.41
11	1.255	-1.801	-1.929	-1.71
12	-3.159	-0.211	-1.512	1.074
13	-1.378	0.952	-0.96	-0.256
14	-0.92	0.933	-0.91	-0.422
15	-0.714	0.857	-1.117	-0.191
16	0.894	-0.667	-0.607	-0.698
17	-1.192	-0.23	-0.629	0.862
18	-0.843	0.272	-0.816	0.596

Standard thresholds

P-value	Threshold
0.001	3.84351
0.0005	4.78956
0.0001	6.80131