ZN263.H12INVIVO.1.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN263.H12INVIVO.1.P.B
Gene (human)	ZNF263 (GeneCards)
Gene synonyms (human)	FPM315, ZKSCAN12
Gene (mouse)	Znf263
Gene synonyms (mouse)	FPM315, Zfp263, ZKSCAN12
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	B

Motif length	21
Consensus	dRGGAGGASbvvSvRvvRRvR
GC content	66.17%
Information content (bits; total / per base)	16.511 / 0.786
Data sources	ChIP-Seq
Aligned words	1003

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (21)	0.815	0.861	0.688	0.754	0.858	0.93	4.726	5.92	86.638	121.252

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.573	0.553	0.535	0.53	0.514	0.517
Methyl HT-SELEX, 1 experiments	best	0.573	0.553	0.535	0.53	0.514	0.517

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.79
HGNC	HGNC:13056
MGI	MGI:1921370
EntrezGene (human)	GeneID:10127 (SSTAR profile)
EntrezGene (mouse)	GeneID:74120 (SSTAR profile)
UniProt ID (human)	ZN263_HUMAN
UniProt ID (mouse)	ZN263_MOUSE
UniProt AC (human)	O14978 (TFClass)
UniProt AC (mouse)	Q8CF60 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZN263.H12INVIVO.1.P.B.pcm
PWM	ZN263.H12INVIVO.1.P.B.pwm
PFM	ZN263.H12INVIVO.1.P.B.pfm
Alignment	ZN263.H12INVIVO.1.P.B.words.tsv
Threshold to P-value map	ZN263.H12INVIVO.1.P.B.thr
Motif in other formats
JASPAR format	ZN263.H12INVIVO.1.P.B_jaspar_format.txt
MEME format	ZN263.H12INVIVO.1.P.B_meme_format.meme
Transfac format	ZN263.H12INVIVO.1.P.B_transfac_format.txt
Homer format	ZN263.H12INVIVO.1.P.B_homer_format_0.001.txt ZN263.H12INVIVO.1.P.B_homer_format_0.0005.txt ZN263.H12INVIVO.1.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	367.0	107.0	409.0	120.0
02	282.0	20.0	649.0	52.0
03	24.0	4.0	943.0	32.0
04	24.0	21.0	956.0	2.0
05	977.0	11.0	6.0	9.0
06	14.0	12.0	952.0	25.0
07	16.0	208.0	775.0	4.0
08	965.0	10.0	7.0	21.0
09	30.0	316.0	642.0	15.0
10	70.0	180.0	574.0	179.0
11	330.0	185.0	429.0	59.0
12	348.0	190.0	334.0	131.0
13	104.0	174.0	651.0	74.0
14	447.0	90.0	379.0	87.0
15	142.0	89.0	701.0	71.0
16	156.0	156.0	610.0	81.0
17	487.0	113.0	343.0	60.0
18	227.0	62.0	663.0	51.0
19	158.0	129.0	673.0	43.0
20	492.0	78.0	356.0	77.0
21	225.0	144.0	587.0	47.0

PFM

	A	C	G	T
01	0.366	0.107	0.408	0.12
02	0.281	0.02	0.647	0.052
03	0.024	0.004	0.94	0.032
04	0.024	0.021	0.953	0.002
05	0.974	0.011	0.006	0.009
06	0.014	0.012	0.949	0.025
07	0.016	0.207	0.773	0.004
08	0.962	0.01	0.007	0.021
09	0.03	0.315	0.64	0.015
10	0.07	0.179	0.572	0.178
11	0.329	0.184	0.428	0.059
12	0.347	0.189	0.333	0.131
13	0.104	0.173	0.649	0.074
14	0.446	0.09	0.378	0.087
15	0.142	0.089	0.699	0.071
16	0.156	0.156	0.608	0.081
17	0.486	0.113	0.342	0.06
18	0.226	0.062	0.661	0.051
19	0.158	0.129	0.671	0.043
20	0.491	0.078	0.355	0.077
21	0.224	0.144	0.585	0.047

PWM

	A	C	G	T
01	0.379	-0.842	0.487	-0.73
02	0.117	-2.453	0.947	-1.547
03	-2.284	-3.786	1.32	-2.013
04	-2.284	-2.408	1.333	-4.216
05	1.355	-2.988	-3.487	-3.158
06	-2.776	-2.912	1.329	-2.246
07	-2.656	-0.186	1.124	-3.786
08	1.343	-3.069	-3.365	-2.408
09	-2.074	0.23	0.936	-2.714
10	-1.258	-0.329	0.824	-0.334
11	0.273	-0.302	0.534	-1.425
12	0.326	-0.275	0.285	-0.643
13	-0.87	-0.362	0.95	-1.204
14	0.575	-1.012	0.411	-1.046
15	-0.563	-1.023	1.024	-1.245
16	-0.47	-0.47	0.885	-1.116
17	0.66	-0.789	0.311	-1.409
18	-0.099	-1.377	0.968	-1.566
19	-0.458	-0.658	0.983	-1.731
20	0.671	-1.153	0.348	-1.165
21	-0.108	-0.55	0.847	-1.645

Standard thresholds

P-value	Threshold
0.001	2.54676
0.0005	3.72631
0.0001	6.21171