ZN263.H12INVITRO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN263.H12INVITRO.0.PM.A
Gene (human)	ZNF263 (GeneCards)
Gene synonyms (human)	FPM315, ZKSCAN12
Gene (mouse)	Znf263
Gene synonyms (mouse)	FPM315, Zfp263, ZKSCAN12
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	16
Consensus	vdddRGGGAGGRnddd
GC content	64.2%
Information content (bits; total / per base)	12.681 / 0.793
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	706

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (21)	0.758	0.794	0.564	0.619	0.761	0.85	2.402	3.086	33.824	72.62

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.642	0.598	0.582	0.564	0.542	0.54
Methyl HT-SELEX, 1 experiments	best	0.642	0.598	0.582	0.564	0.542	0.54

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.79
HGNC	HGNC:13056
MGI	MGI:1921370
EntrezGene (human)	GeneID:10127 (SSTAR profile)
EntrezGene (mouse)	GeneID:74120 (SSTAR profile)
UniProt ID (human)	ZN263_HUMAN
UniProt ID (mouse)	ZN263_MOUSE
UniProt AC (human)	O14978 (TFClass)
UniProt AC (mouse)	Q8CF60 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZN263.H12INVITRO.0.PM.A.pcm
PWM	ZN263.H12INVITRO.0.PM.A.pwm
PFM	ZN263.H12INVITRO.0.PM.A.pfm
Alignment	ZN263.H12INVITRO.0.PM.A.words.tsv
Threshold to P-value map	ZN263.H12INVITRO.0.PM.A.thr
Motif in other formats
JASPAR format	ZN263.H12INVITRO.0.PM.A_jaspar_format.txt
MEME format	ZN263.H12INVITRO.0.PM.A_meme_format.meme
Transfac format	ZN263.H12INVITRO.0.PM.A_transfac_format.txt
Homer format	ZN263.H12INVITRO.0.PM.A_homer_format_0.001.txt ZN263.H12INVITRO.0.PM.A_homer_format_0.0005.txt ZN263.H12INVITRO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	155.0	130.0	293.0	128.0
02	139.5	76.5	381.5	108.5
03	95.0	74.0	408.0	129.0
04	202.0	25.0	365.0	114.0
05	452.0	20.0	174.0	60.0
06	69.0	0.0	622.0	15.0
07	0.0	1.0	700.0	5.0
08	0.0	0.0	701.0	5.0
09	706.0	0.0	0.0	0.0
10	74.0	0.0	609.0	23.0
11	14.0	112.0	577.0	3.0
12	256.0	9.0	373.0	68.0
13	178.0	162.0	238.0	128.0
14	157.0	76.0	356.0	117.0
15	177.5	71.5	295.5	161.5
16	152.25	105.25	297.25	151.25

PFM

	A	C	G	T
01	0.22	0.184	0.415	0.181
02	0.198	0.108	0.54	0.154
03	0.135	0.105	0.578	0.183
04	0.286	0.035	0.517	0.161
05	0.64	0.028	0.246	0.085
06	0.098	0.0	0.881	0.021
07	0.0	0.001	0.992	0.007
08	0.0	0.0	0.993	0.007
09	1.0	0.0	0.0	0.0
10	0.105	0.0	0.863	0.033
11	0.02	0.159	0.817	0.004
12	0.363	0.013	0.528	0.096
13	0.252	0.229	0.337	0.181
14	0.222	0.108	0.504	0.166
15	0.251	0.101	0.419	0.229
16	0.216	0.149	0.421	0.214

PWM

	A	C	G	T
01	-0.129	-0.302	0.503	-0.318
02	-0.233	-0.824	0.766	-0.481
03	-0.612	-0.857	0.833	-0.31
04	0.134	-1.9	0.722	-0.432
05	0.935	-2.108	-0.014	-1.061
06	-0.925	-4.688	1.253	-2.371
07	-4.688	-4.212	1.371	-3.289
08	-4.688	-4.688	1.372	-3.289
09	1.379	-4.688	-4.688	-4.688
10	-0.857	-4.688	1.232	-1.978
11	-2.433	-0.45	1.178	-3.648
12	0.369	-2.818	0.743	-0.939
13	0.008	-0.085	0.297	-0.318
14	-0.116	-0.83	0.697	-0.406
15	0.006	-0.89	0.512	-0.088
16	-0.146	-0.511	0.518	-0.153

Standard thresholds

P-value	Threshold
0.001	3.86171
0.0005	5.00496
0.0001	7.25476