ZN260.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN260.H12CORE.0.P.C
Gene (human)	ZNF260 (GeneCards)
Gene synonyms (human)	ZFP260
Gene (mouse)	Znf260
Gene synonyms (mouse)	Zfp260
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	TTTdYATRGCTGYATARTATTCC
GC content	35.2%
Information content (bits; total / per base)	30.719 / 1.336
Data sources	ChIP-Seq
Aligned words	869

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.904	0.915	0.91	0.923	0.912	0.921	14.545	15.105	354.77	388.252

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF146-like {2.3.3.55} (TFClass)
TFClass ID	TFClass: 2.3.3.55.2
HGNC	HGNC:13499
MGI	MGI:1347071
EntrezGene (human)	GeneID:339324 (SSTAR profile)
EntrezGene (mouse)	GeneID:26466 (SSTAR profile)
UniProt ID (human)	ZN260_HUMAN
UniProt ID (mouse)	ZN260_MOUSE
UniProt AC (human)	Q3ZCT1 (TFClass)
UniProt AC (mouse)	Q62513 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN260.H12CORE.0.P.C.pcm
PWM	ZN260.H12CORE.0.P.C.pwm
PFM	ZN260.H12CORE.0.P.C.pfm
Alignment	ZN260.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN260.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN260.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN260.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN260.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN260.H12CORE.0.P.C_homer_format_0.001.txt ZN260.H12CORE.0.P.C_homer_format_0.0005.txt ZN260.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	31.0	16.0	11.0	811.0
02	15.0	8.0	29.0	817.0
03	12.0	15.0	40.0	802.0
04	288.0	34.0	144.0	403.0
05	70.0	209.0	41.0	549.0
06	775.0	36.0	25.0	33.0
07	9.0	221.0	7.0	632.0
08	185.0	10.0	521.0	153.0
09	42.0	2.0	815.0	10.0
10	0.0	640.0	7.0	222.0
11	14.0	15.0	1.0	839.0
12	20.0	46.0	780.0	23.0
13	124.0	617.0	1.0	127.0
14	693.0	4.0	172.0	0.0
15	0.0	3.0	2.0	864.0
16	791.0	4.0	21.0	53.0
17	131.0	116.0	612.0	10.0
18	10.0	4.0	22.0	833.0
19	843.0	2.0	12.0	12.0
20	3.0	96.0	9.0	761.0
21	4.0	3.0	5.0	857.0
22	0.0	835.0	0.0	34.0
23	11.0	820.0	2.0	36.0

PFM

	A	C	G	T
01	0.036	0.018	0.013	0.933
02	0.017	0.009	0.033	0.94
03	0.014	0.017	0.046	0.923
04	0.331	0.039	0.166	0.464
05	0.081	0.241	0.047	0.632
06	0.892	0.041	0.029	0.038
07	0.01	0.254	0.008	0.727
08	0.213	0.012	0.6	0.176
09	0.048	0.002	0.938	0.012
10	0.0	0.736	0.008	0.255
11	0.016	0.017	0.001	0.965
12	0.023	0.053	0.898	0.026
13	0.143	0.71	0.001	0.146
14	0.797	0.005	0.198	0.0
15	0.0	0.003	0.002	0.994
16	0.91	0.005	0.024	0.061
17	0.151	0.133	0.704	0.012
18	0.012	0.005	0.025	0.959
19	0.97	0.002	0.014	0.014
20	0.003	0.11	0.01	0.876
21	0.005	0.003	0.006	0.986
22	0.0	0.961	0.0	0.039
23	0.013	0.944	0.002	0.041

PWM

	A	C	G	T
01	-1.902	-2.516	-2.848	1.312
02	-2.574	-3.118	-1.965	1.319
03	-2.772	-2.574	-1.659	1.3
04	0.28	-1.814	-0.407	0.614
05	-1.116	-0.038	-1.635	0.922
06	1.266	-1.759	-2.104	-1.842
07	-3.019	0.017	-3.226	1.063
08	-0.159	-2.93	0.87	-0.347
09	-1.612	-4.083	1.316	-2.93
10	-4.863	1.075	-3.226	0.021
11	-2.636	-2.574	-4.399	1.345
12	-2.312	-1.524	1.273	-2.182
13	-0.555	1.039	-4.399	-0.531
14	1.155	-3.65	-0.232	-4.863
15	-4.863	-3.843	-4.083	1.375
16	1.287	-3.65	-2.267	-1.387
17	-0.501	-0.621	1.031	-2.93
18	-2.93	-3.65	-2.224	1.338
19	1.35	-4.083	-2.772	-2.772
20	-3.843	-0.807	-3.019	1.248
21	-3.65	-3.843	-3.488	1.367
22	-4.863	1.341	-4.863	-1.814
23	-2.848	1.323	-4.083	-1.759

Standard thresholds

P-value	Threshold
0.001	-6.72769
0.0005	-4.88029
0.0001	-0.92684