MotifZN254.H12INVIVO.0.P.C
Gene (human)ZNF254
(GeneCards)
Gene synonyms (human)BMZF5, ZNF539, ZNF91L
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length21
ConsensusAAGATGTAGGCTGGGAGGCTA
GC content52.04%
Information content (bits; total / per base)36.953 / 1.76
Data sourcesChIP-Seq
Aligned words676

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.962 0.98 0.959 0.976 0.944 0.968 16.857 17.639 561.219 583.886
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.182
HGNCHGNC:13047
MGI
EntrezGene (human)GeneID:9534
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN254_HUMAN
UniProt ID (mouse)
UniProt AC (human)O75437
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01654.08.010.04.0
02655.01.014.06.0
0310.06.0656.04.0
04636.020.013.07.0
054.031.05.0636.0
0658.04.0605.09.0
075.044.013.0614.0
08662.02.06.06.0
096.02.0665.03.0
107.04.0655.010.0
113.0668.00.05.0
121.05.00.0670.0
1314.02.0650.010.0
1449.00.0624.03.0
159.06.0654.07.0
16672.03.01.00.0
176.03.0664.03.0
1817.02.0654.03.0
190.0674.02.00.0
201.01.00.0674.0
21661.05.05.05.0
PFM
ACGT
010.9670.0120.0150.006
020.9690.0010.0210.009
030.0150.0090.970.006
040.9410.030.0190.01
050.0060.0460.0070.941
060.0860.0060.8950.013
070.0070.0650.0190.908
080.9790.0030.0090.009
090.0090.0030.9840.004
100.010.0060.9690.015
110.0040.9880.00.007
120.0010.0070.00.991
130.0210.0030.9620.015
140.0720.00.9230.004
150.0130.0090.9670.01
160.9940.0040.0010.0
170.0090.0040.9820.004
180.0250.0030.9670.004
190.00.9970.0030.0
200.0010.0010.00.997
210.9780.0070.0070.007
PWM
ACGT
011.346-2.875-2.686-3.412
021.348-4.173-2.39-3.108
03-2.686-3.1081.349-3.412
041.318-2.065-2.456-2.984
05-3.412-1.654-3.2481.318
06-1.051-3.4121.268-2.776
07-3.248-1.319-2.4561.283
081.358-3.851-3.108-3.108
09-3.108-3.8511.363-3.607
10-2.984-3.4121.348-2.686
11-3.6071.367-4.651-3.248
12-4.173-3.248-4.6511.37
13-2.39-3.8511.34-2.686
14-1.215-4.6511.299-3.607
15-2.776-3.1081.346-2.984
161.373-3.607-4.173-4.651
17-3.108-3.6071.361-3.607
18-2.215-3.8511.346-3.607
19-4.6511.376-3.851-4.651
20-4.173-4.173-4.6511.376
211.357-3.248-3.248-3.248
Standard thresholds
P-value Threshold
0.001 -12.96549
0.0005 -10.84719
0.0001 -6.28349